Variant report

Variant	rs7174497
Chromosome Location	chr15:52048174-52048175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52047517..52051526-chr15:52055116..52057120,3	K562	blood:
2	chr15:52043733..52046292-chr15:52047210..52050045,3	MCF-7	breast:
3	chr15:52027911..52030761-chr15:52046678..52049036,2	K562	blood:
4	chr15:52043149..52046754-chr15:52046824..52050469,4	K562	blood:
5	chr15:52046348..52048954-chr15:52084849..52087226,2	K562	blood:
6	chr15:51997400..52000250-chr15:52046573..52049240,2	MCF-7	breast:
7	chr15:52018406..52020693-chr15:52046360..52048618,2	K562	blood:
8	chr15:52028579..52031295-chr15:52046217..52050933,5	MCF-7	breast:
9	chr15:52042908..52046919-chr15:52047131..52052382,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128872	Chromatin interaction
ENSG00000259377	Chromatin interaction
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 244 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:242)

rs_ID	r²[population]
rs1001690	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs1035737	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs10444824	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10444825	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10775145	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs10851503	0.85[EUR][1000 genomes]
rs10851504	0.82[EUR][1000 genomes]
rs11049	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs11070865	0.81[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs11070866	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070867	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070868	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070869	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1133883	1.00[CEU][hapmap]
rs11630253	0.82[EUR][1000 genomes]
rs11630579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11630943	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11631858	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11636345	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs11636869	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11637876	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11638677	0.81[EUR][1000 genomes]
rs11638820	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs12050524	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12591672	0.82[EUR][1000 genomes]
rs12593708	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12901638	0.83[EUR][1000 genomes]
rs12903500	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12903707	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs12904413	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12904900	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12905283	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs12908327	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs12912928	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12913583	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12913850	0.85[EUR][1000 genomes]
rs12915015	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12915568	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12917133	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs1350174	0.82[GIH][hapmap];0.85[TSI][hapmap]
rs17526463	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17526760	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs17539905	0.82[EUR][1000 genomes]
rs17610862	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17611193	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1811326	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs1840708	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1863430	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1902430	0.82[GIH][hapmap];0.85[TSI][hapmap]
rs1972689	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs1991267	0.85[CEU][hapmap]
rs2006773	0.85[EUR][1000 genomes]
rs2007335	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2007355	0.96[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs2009972	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs2010026	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2011995	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2014638	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs2034856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2034857	0.90[GIH][hapmap];0.85[TSI][hapmap]
rs2034858	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2052705	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2052706	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2052708	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2052709	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2077743	0.82[GIH][hapmap];0.85[TSI][hapmap]
rs2114191	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.80[EUR][1000 genomes]
rs2252606	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2252831	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs2253116	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs2303443	0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap]
rs2414116	0.81[GIH][hapmap]
rs2414122	0.84[CEU][hapmap];0.93[GIH][hapmap];0.81[EUR][1000 genomes]
rs2433217	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs2433221	0.96[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.80[EUR][1000 genomes]
rs2433222	0.82[EUR][1000 genomes]
rs2436655	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2436656	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2436657	0.82[EUR][1000 genomes]
rs2436658	0.80[EUR][1000 genomes]
rs2436660	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs2436662	0.85[EUR][1000 genomes]
rs2441780	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs2448946	1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs2448947	0.83[EUR][1000 genomes]
rs2448948	0.83[EUR][1000 genomes]
rs2448950	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2448951	0.83[EUR][1000 genomes]
rs2448953	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2470600	0.83[EUR][1000 genomes]
rs2470601	0.83[EUR][1000 genomes]
rs2470602	0.80[EUR][1000 genomes]
rs2470608	0.83[EUR][1000 genomes]
rs2470610	0.83[EUR][1000 genomes]
rs2470611	0.82[EUR][1000 genomes]
rs2470612	1.00[CEU][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs2470618	0.82[EUR][1000 genomes]
rs2554314	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554322	0.81[EUR][1000 genomes]
rs2554327	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs2554328	0.85[EUR][1000 genomes]
rs2554336	0.91[GIH][hapmap];0.85[TSI][hapmap]
rs2554342	0.81[EUR][1000 genomes]
rs2554348	0.92[CEU][hapmap]
rs2554349	1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs2554350	0.82[EUR][1000 genomes]
rs2554353	0.85[EUR][1000 genomes]
rs2570224	0.91[GIH][hapmap];0.86[TSI][hapmap]
rs2570228	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2570238	0.85[EUR][1000 genomes]
rs2570239	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs2570240	0.82[EUR][1000 genomes]
rs2570241	1.00[CEU][hapmap];0.98[GIH][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs2570248	0.85[EUR][1000 genomes]
rs2570258	0.91[GIH][hapmap];0.85[TSI][hapmap]
rs2570263	0.81[EUR][1000 genomes]
rs2570268	0.81[EUR][1000 genomes]
rs2570269	0.80[EUR][1000 genomes]
rs2570271	0.80[EUR][1000 genomes]
rs2570275	0.80[EUR][1000 genomes]
rs2593168	0.82[EUR][1000 genomes]
rs2593170	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs2593173	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs2593177	0.80[EUR][1000 genomes]
rs2593179	0.82[EUR][1000 genomes]
rs2593181	0.85[CEU][hapmap]
rs2593182	0.82[EUR][1000 genomes]
rs2593183	0.82[EUR][1000 genomes]
rs2593185	0.80[EUR][1000 genomes]
rs2593187	0.80[EUR][1000 genomes]
rs2593188	0.80[EUR][1000 genomes]
rs2593198	0.80[EUR][1000 genomes]
rs2593199	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2593202	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2623243	0.80[EUR][1000 genomes]
rs2623244	0.80[EUR][1000 genomes]
rs2623255	1.00[CEU][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap]
rs2623266	0.82[EUR][1000 genomes]
rs2623271	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs2623279	0.82[EUR][1000 genomes]
rs2623281	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2623282	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2623283	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2623284	0.82[EUR][1000 genomes]
rs2623285	0.82[EUR][1000 genomes]
rs2623286	0.82[EUR][1000 genomes]
rs2623288	0.81[EUR][1000 genomes]
rs2623289	0.81[EUR][1000 genomes]
rs28699115	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2912186	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2912187	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2912188	0.81[EUR][1000 genomes]
rs2912189	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs2916169	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2916170	0.81[EUR][1000 genomes]
rs2916171	0.81[EUR][1000 genomes]
rs2916172	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs2916175	0.83[EUR][1000 genomes]
rs2916176	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs2916177	1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs2921951	0.82[EUR][1000 genomes]
rs2921953	0.83[EUR][1000 genomes]
rs2929422	0.81[EUR][1000 genomes]
rs2929423	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2929424	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2929425	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs2929426	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2929428	0.82[EUR][1000 genomes]
rs2959285	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs2959291	0.81[EUR][1000 genomes]
rs2959292	0.81[EUR][1000 genomes]
rs2959293	0.96[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs2959298	1.00[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs2959299	1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs2959300	0.83[EUR][1000 genomes]
rs2959305	0.83[EUR][1000 genomes]
rs2959306	0.82[EUR][1000 genomes]
rs2959307	0.83[EUR][1000 genomes]
rs3088312	0.90[EUR][1000 genomes]
rs34098740	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34504520	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35270232	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35391204	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35823585	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36087956	0.83[EUR][1000 genomes]
rs3751596	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs3794532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3794535	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs3898905	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4238383	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs4365237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774602	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs4775983	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs55887408	0.86[AMR][1000 genomes]
rs56148956	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56185947	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62016192	0.82[EUR][1000 genomes]
rs6493520	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6493521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6493523	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs6493525	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs6493526	1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs689884	0.86[GIH][hapmap];0.87[TSI][hapmap]
rs7162176	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162554	0.80[EUR][1000 genomes]
rs7162925	1.00[CEU][hapmap];0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs7163541	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7164961	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7165585	0.85[TSI][hapmap]
rs7166962	0.91[EUR][1000 genomes]
rs7168659	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7170091	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7170910	0.84[EUR][1000 genomes]
rs7171516	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7171796	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7174808	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175017	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178166	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7178561	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7178776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7178940	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7179599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7181540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7181553	0.86[GIH][hapmap];0.85[TSI][hapmap]
rs726158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72732914	0.83[EUR][1000 genomes]
rs8024585	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8025069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026521	0.91[EUR][1000 genomes]
rs8027721	0.84[EUR][1000 genomes]
rs8028258	0.84[GIH][hapmap];0.85[TSI][hapmap]
rs8028486	0.87[EUR][1000 genomes]
rs8028922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8033433	0.85[EUR][1000 genomes]
rs8035126	0.84[EUR][1000 genomes]
rs8035173	0.92[CEU][hapmap];0.93[GIH][hapmap];0.82[EUR][1000 genomes]
rs8038344	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs8040975	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8040986	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8040991	0.85[EUR][1000 genomes]
rs990665	0.82[EUR][1000 genomes]
rs9944235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7174497	GNB5	cis	lymphoblastoid	seeQTL
rs7174497	SCG3	cis	Frontal Cortex	GTEx
rs7174497	TMOD2	cis	cerebellum	SCAN

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52044400-52050800	Weak transcription	Gastric	stomach
2	chr15:52044600-52060000	Weak transcription	Esophagus	oesophagus
3	chr15:52044600-52060200	Weak transcription	Aorta	Aorta
4	chr15:52044800-52049800	Weak transcription	Psoas Muscle	Psoas
5	chr15:52044800-52050600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:52044800-52051000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:52044800-52051000	Weak transcription	Right Ventricle	heart
8	chr15:52044800-52060000	Weak transcription	Spleen	Spleen
9	chr15:52045000-52049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:52045000-52049800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:52045000-52050600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr15:52045000-52050800	Weak transcription	HMEC	breast
13	chr15:52045000-52060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:52045200-52048200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:52045200-52049800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:52045200-52050600	Weak transcription	Brain Germinal Matrix	brain
17	chr15:52045200-52053400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr15:52045400-52048600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr15:52045400-52050400	Weak transcription	Fetal Brain Female	brain
20	chr15:52045400-52050600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:52045400-52050600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr15:52045400-52051000	Weak transcription	Left Ventricle	heart
23	chr15:52045600-52048200	Weak transcription	Adipose Nuclei	Adipose
24	chr15:52045600-52049800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:52045600-52050600	Weak transcription	Colon Smooth Muscle	Colon
26	chr15:52045800-52049800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr15:52045800-52053200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:52046000-52050400	Weak transcription	Fetal Brain Male	brain
29	chr15:52046400-52049200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:52046800-52048200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr15:52046800-52048200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:52046800-52060000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr15:52047000-52049400	Enhancers	Primary B cells from cord blood	blood
34	chr15:52047000-52052400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr15:52047200-52048800	Enhancers	Fetal Thymus	thymus
36	chr15:52047200-52053600	Enhancers	Brain Cingulate Gyrus	brain
37	chr15:52047400-52049200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:52047400-52049200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr15:52047400-52050800	Enhancers	Brain Anterior Caudate	brain
40	chr15:52047400-52050800	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr15:52047400-52050800	Enhancers	Brain Substantia Nigra	brain
42	chr15:52047400-52053600	Enhancers	Brain Hippocampus Middle	brain
43	chr15:52047600-52048200	Enhancers	Thymus	Thymus
44	chr15:52047600-52048400	Enhancers	Lung	lung
45	chr15:52047600-52048600	Enhancers	K562	blood
46	chr15:52047600-52048800	Enhancers	Right Atrium	heart
47	chr15:52047600-52049000	Enhancers	Brain Angular Gyrus	brain
48	chr15:52047800-52048200	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr15:52047800-52048200	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr15:52047800-52048400	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links