Variant report

Variant	rs7178561
Chromosome Location	chr15:52118906-52118907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52097471..52100058-chr15:52117119..52119729,2	MCF-7	breast:
2	chr15:52073339..52076081-chr15:52117366..52119031,2	K562	blood:
3	chr15:52103958..52107915-chr15:52115684..52119713,4	MCF-7	breast:
4	chr15:52118547..52120941-chr15:52173181..52175406,2	K562	blood:

Variant related genes	Relation type
ENSG00000128872	Chromatin interaction

Extended variants
information (count: 253 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:252)

rs_ID	r²[population]
rs1001690	0.93[CEU][hapmap]
rs1025184	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1035737	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1035739	0.82[EUR][1000 genomes]
rs10444824	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10444825	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10851503	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10851504	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11049	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11070865	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11070866	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11070867	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11070868	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11070869	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1133883	1.00[CEU][hapmap]
rs11630253	0.87[EUR][1000 genomes]
rs11630579	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11630943	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11631858	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11636869	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637876	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11638677	0.86[EUR][1000 genomes]
rs12050524	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12591672	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12593708	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12901638	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12903500	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12903707	0.82[CHB][hapmap]
rs12904413	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12904900	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12905283	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12908327	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12912928	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12913583	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12913850	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12915015	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12915568	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17526463	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17526760	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17539905	0.87[EUR][1000 genomes]
rs17610862	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17611193	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17612102	0.83[EUR][1000 genomes]
rs17612123	0.84[EUR][1000 genomes]
rs1811326	0.82[CHB][hapmap]
rs1840708	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1863430	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1867984	0.83[CHB][hapmap]
rs1972689	0.82[CHB][hapmap]
rs1991267	0.85[CEU][hapmap]
rs2006773	0.94[EUR][1000 genomes]
rs2007335	1.00[CEU][hapmap];0.90[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2007355	0.96[CEU][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2009972	0.89[CEU][hapmap]
rs2010026	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2011995	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2034856	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2052705	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2052706	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2052708	1.00[CEU][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2052709	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2114191	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2241503	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2252606	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs2252831	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2253116	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs2258248	0.85[CEU][hapmap]
rs2264339	0.82[CHB][hapmap]
rs2303443	0.95[CHB][hapmap];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2414122	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs2433217	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2433221	0.96[CEU][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes]
rs2433222	0.89[EUR][1000 genomes]
rs2436655	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2436656	1.00[CEU][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2436657	0.89[EUR][1000 genomes]
rs2436658	0.87[EUR][1000 genomes]
rs2436660	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[EUR][1000 genomes]
rs2436662	0.94[EUR][1000 genomes]
rs2441780	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2448946	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2448947	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2448948	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2448949	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2448950	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2448951	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2448953	1.00[CEU][hapmap];0.82[YRI][hapmap];0.86[EUR][1000 genomes]
rs2470600	0.90[EUR][1000 genomes]
rs2470601	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2470602	0.87[EUR][1000 genomes]
rs2470603	0.82[EUR][1000 genomes]
rs2470605	0.80[EUR][1000 genomes]
rs2470607	0.81[EUR][1000 genomes]
rs2470608	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2470610	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2470611	0.87[EUR][1000 genomes]
rs2470612	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs2470616	0.86[EUR][1000 genomes]
rs2470617	0.96[CEU][hapmap];0.83[CHB][hapmap]
rs2470618	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2554305	0.82[CHB][hapmap]
rs2554307	0.82[CHB][hapmap]
rs2554308	0.83[CHB][hapmap]
rs2554314	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2554322	0.88[EUR][1000 genomes]
rs2554327	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2554328	0.94[EUR][1000 genomes]
rs2554336	0.82[CHB][hapmap]
rs2554342	0.88[EUR][1000 genomes]
rs2554348	0.89[CEU][hapmap]
rs2554349	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2554350	0.89[EUR][1000 genomes]
rs2554353	0.94[EUR][1000 genomes]
rs2570228	0.82[CHB][hapmap]
rs2570233	0.83[CHB][hapmap]
rs2570238	0.95[EUR][1000 genomes]
rs2570239	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2570240	0.91[EUR][1000 genomes]
rs2570241	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2570248	0.94[EUR][1000 genomes]
rs2570258	0.82[CHB][hapmap]
rs2570263	0.88[EUR][1000 genomes]
rs2570268	0.88[EUR][1000 genomes]
rs2570269	0.87[EUR][1000 genomes]
rs2570271	0.87[EUR][1000 genomes]
rs2570275	0.87[EUR][1000 genomes]
rs2593168	0.89[EUR][1000 genomes]
rs2593170	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2593173	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs2593177	0.87[EUR][1000 genomes]
rs2593179	0.89[EUR][1000 genomes]
rs2593181	0.83[CEU][hapmap]
rs2593182	0.89[EUR][1000 genomes]
rs2593183	0.89[EUR][1000 genomes]
rs2593185	0.84[CEU][hapmap];0.81[CHB][hapmap];0.87[EUR][1000 genomes]
rs2593187	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs2593188	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2593198	0.87[EUR][1000 genomes]
rs2593199	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2593202	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs2593204	0.82[EUR][1000 genomes]
rs2623243	0.87[EUR][1000 genomes]
rs2623244	0.87[EUR][1000 genomes]
rs2623254	0.82[CHB][hapmap]
rs2623255	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2623266	0.89[EUR][1000 genomes]
rs2623271	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2623279	0.89[EUR][1000 genomes]
rs2623281	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs2623282	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2623283	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[EUR][1000 genomes]
rs2623284	0.89[EUR][1000 genomes]
rs2623285	0.89[EUR][1000 genomes]
rs2623286	0.89[EUR][1000 genomes]
rs2623288	0.88[EUR][1000 genomes]
rs2623289	0.88[EUR][1000 genomes]
rs28699115	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2912186	1.00[CEU][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2912187	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2912188	0.86[EUR][1000 genomes]
rs2912189	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2916169	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2916170	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2916171	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2916172	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2916175	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2916176	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2916177	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2921951	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2921953	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2929422	0.86[EUR][1000 genomes]
rs2929423	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2929424	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2929425	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2929426	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2929428	0.87[EUR][1000 genomes]
rs2959285	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2959289	0.88[EUR][1000 genomes]
rs2959291	0.86[EUR][1000 genomes]
rs2959292	0.86[EUR][1000 genomes]
rs2959293	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs2959296	0.81[CEU][hapmap]
rs2959298	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2959299	1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2959300	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2959302	0.86[EUR][1000 genomes]
rs2959304	0.85[EUR][1000 genomes]
rs2959305	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2959306	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2959307	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3088312	0.81[EUR][1000 genomes]
rs34504520	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35270232	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35391204	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35823585	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36087956	0.88[EUR][1000 genomes]
rs3794532	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3794535	0.82[CHB][hapmap]
rs3898905	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4365237	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4775982	0.82[CHB][hapmap]
rs4775983	0.82[CHB][hapmap]
rs55887408	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56148956	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56185947	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62015190	0.83[EUR][1000 genomes]
rs62016192	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6493520	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6493521	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6493523	0.82[CHB][hapmap]
rs6493525	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6493526	1.00[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67895020	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7162176	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7162554	0.87[EUR][1000 genomes]
rs7162925	1.00[CEU][hapmap];0.80[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7163541	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7164961	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7166962	0.82[EUR][1000 genomes]
rs7168659	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7170091	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7170910	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7171516	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7171796	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7174497	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7174808	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7175017	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7178166	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7178776	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7178940	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7179599	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7181540	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7182917	0.89[ASN][1000 genomes]
rs726158	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72732914	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8024585	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025069	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8026521	0.93[EUR][1000 genomes]
rs8027721	0.83[EUR][1000 genomes]
rs8028486	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8028922	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8029036	0.84[EUR][1000 genomes]
rs8033433	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8035126	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8035173	0.92[CEU][hapmap]
rs8038344	1.00[CEU][hapmap];0.95[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8040975	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8040986	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8040991	0.94[EUR][1000 genomes]
rs8041866	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs990665	0.89[EUR][1000 genomes]
rs9944235	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7178561	SCG3	cis	Frontal Cortex	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52107200-52121400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:52114000-52121200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:52114000-52121400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:52114000-52121600	Weak transcription	Aorta	Aorta
5	chr15:52114200-52121600	Weak transcription	Psoas Muscle	Psoas
6	chr15:52116600-52119200	Enhancers	Hela-S3	cervix
7	chr15:52117600-52121600	Weak transcription	NHDF-Ad	bronchial
8	chr15:52117800-52120800	Weak transcription	A549	lung
9	chr15:52118200-52120000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:52118200-52120400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:52118200-52121200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:52118400-52121000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:52118800-52120000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:52118800-52120400	Weak transcription	HMEC	breast
15	chr15:52118800-52120400	Weak transcription	NHEK	skin
16	chr15:52118800-52121000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:52118800-52121400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:52118800-52121400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:52118800-52121600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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