Variant report

Variant	rs2570233
Chromosome Location	chr15:52121846-52121847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:64970140..64970771-chr15:52121668..52122358,2	Hela-S3	cervix:
2	chr11:64646057..64646777-chr15:52121793..52122376,2	Hela-S3	cervix:
3	chr15:50716224..50718029-chr15:52121423..52123385,2	MCF-7	breast:
4	chr15:52121304..52123293-chr15:52174334..52178063,3	MCF-7	breast:
5	chr15:52029378..52032499-chr15:52121077..52123299,3	MCF-7	breast:
6	chr11:61734550..61735443-chr15:52121664..52122520,2	Hela-S3	cervix:
7	chr15:51532110..51534876-chr15:52120989..52123344,2	MCF-7	breast:
8	chr15:52121176..52123509-chr15:52196902..52200014,3	MCF-7	breast:
9	chr15:52072025..52074741-chr15:52120265..52123225,4	MCF-7	breast:
10	chr15:52120762..52123532-chr15:52245423..52248138,2	MCF-7	breast:
11	chr15:52042996..52044811-chr15:52120947..52123164,2	MCF-7	breast:
12	chr15:52121669..52122370-chr22:38142205..38143018,2	Hela-S3	cervix:
13	chr15:52120607..52125174-chr15:52151783..52155506,6	MCF-7	breast:
14	chr15:52120464..52122354-chr15:52198415..52201351,4	MCF-7	breast:
15	chr15:52121756..52123415-chr15:52859545..52862503,2	MCF-7	breast:
16	chr15:52119461..52123475-chr15:52166022..52168353,4	MCF-7	breast:
17	chr15:51914529..51916927-chr15:52121179..52124043,2	MCF-7	breast:
18	chr15:52072694..52074758-chr15:52121019..52123367,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000138592	Chromatin interaction
ENSG00000272337	Chromatin interaction
ENSG00000166477	Chromatin interaction
ENSG00000128989	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000138594	Chromatin interaction
ENSG00000266593	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000259632	Chromatin interaction
ENSG00000140280	Chromatin interaction
ENSG00000259377	Chromatin interaction
ENSG00000104093	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000207484	Chromatin interaction
ENSG00000167996	Chromatin interaction
ENSG00000100106	Chromatin interaction

Extended variants
information (count: 192 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:191)

rs_ID	r²[population]
rs1001690	0.82[CHB][hapmap]
rs1025184	0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1035739	0.87[ASN][1000 genomes]
rs10444798	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10444823	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10775145	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11049	0.80[CEU][hapmap]
rs11070864	0.84[EUR][1000 genomes]
rs1133882	0.96[CEU][hapmap];0.82[CHB][hapmap]
rs11630084	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11632106	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11636345	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11638161	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11638766	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11638820	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12438686	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12903707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12905283	0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12917133	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1350174	0.96[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs1466276	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs1545602	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17612123	0.80[AMR][1000 genomes]
rs17705732	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1811326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1867984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1895863	0.94[ASN][1000 genomes]
rs1902430	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1972689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2006772	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2006773	0.82[CHB][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes]
rs2009972	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs2011995	0.83[YRI][hapmap]
rs2014638	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2034857	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2034858	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2052705	0.82[CHB][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes]
rs2052706	0.81[CHB][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes]
rs2052709	0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2077743	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs2241503	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs2252606	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2252831	0.81[CHB][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes]
rs2253116	1.00[CHB][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2264339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2303443	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2414117	0.84[EUR][1000 genomes]
rs2414119	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2433222	0.80[AMR][1000 genomes]
rs2436657	0.81[AMR][1000 genomes]
rs2436658	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2436661	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436662	0.88[AMR][1000 genomes]
rs2470602	0.87[ASN][1000 genomes]
rs2470603	0.87[ASN][1000 genomes]
rs2470604	0.84[ASN][1000 genomes]
rs2470605	0.85[ASN][1000 genomes]
rs2470607	0.85[ASN][1000 genomes]
rs2470616	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2470617	0.85[CHB][hapmap]
rs2470619	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2554305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554306	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554315	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2554322	0.81[AMR][1000 genomes]
rs2554327	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs2554328	0.86[AMR][1000 genomes]
rs2554332	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2554334	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2554336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2554342	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554345	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2554348	0.93[YRI][hapmap]
rs2554349	0.95[CHB][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2554350	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2554353	0.89[AMR][1000 genomes]
rs2554354	0.82[CEU][hapmap]
rs2554355	0.81[CEU][hapmap]
rs2570224	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2570228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2570231	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2570235	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570236	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2570237	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2570238	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2570239	0.82[CHB][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes]
rs2570240	0.89[AMR][1000 genomes]
rs2570241	0.92[YRI][hapmap];0.89[AMR][1000 genomes]
rs2570243	0.83[CEU][hapmap]
rs2570248	0.88[AMR][1000 genomes]
rs2570251	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2570252	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2570253	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2570258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2570260	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2570263	0.87[ASN][1000 genomes]
rs2570268	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2570269	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2570271	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2570275	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2593167	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2593169	0.83[CEU][hapmap]
rs2593170	0.82[CHB][hapmap];0.92[YRI][hapmap]
rs2593173	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2593179	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2593182	0.85[AMR][1000 genomes]
rs2593183	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2593185	0.95[CHB][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2593187	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2593188	0.82[CHB][hapmap];0.92[YRI][hapmap]
rs2593191	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2593194	0.80[AMR][1000 genomes]
rs2593198	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2593199	0.82[YRI][hapmap]
rs2593202	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2593204	0.87[ASN][1000 genomes]
rs2623245	0.81[CEU][hapmap]
rs2623247	0.83[CEU][hapmap]
rs2623251	0.85[CEU][hapmap]
rs2623254	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2623255	0.82[CHB][hapmap]
rs2623259	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2623262	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2623263	0.85[CEU][hapmap]
rs2623266	0.85[AMR][1000 genomes]
rs2623271	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs2623279	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2623281	1.00[CHB][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2623282	0.83[CHB][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes]
rs2623283	1.00[CHB][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2623284	0.81[AMR][1000 genomes]
rs2623285	0.81[AMR][1000 genomes]
rs2623286	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2623288	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2623289	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2959302	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3110553	0.80[AMR][1000 genomes]
rs3751596	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3794530	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3794534	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3794535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3794536	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4238383	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4502160	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4534783	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4622456	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4774602	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4775978	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4775982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4775983	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55843525	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55887408	0.92[EUR][1000 genomes]
rs58758283	0.99[ASN][1000 genomes]
rs60329909	0.99[ASN][1000 genomes]
rs6493518	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493519	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6493522	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493523	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67895020	0.94[EUR][1000 genomes]
rs689884	0.92[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs689922	0.89[ASN][1000 genomes]
rs690287	0.90[ASN][1000 genomes]
rs690638	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs7162554	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7163176	0.84[EUR][1000 genomes]
rs7165283	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7165585	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs7166110	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7168659	0.82[CHB][hapmap]
rs7171459	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7173375	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7174941	0.94[EUR][1000 genomes]
rs7176421	0.94[ASN][1000 genomes]
rs7178561	0.83[CHB][hapmap]
rs7181553	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7182917	0.92[EUR][1000 genomes]
rs72732952	0.93[ASN][1000 genomes]
rs8024081	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8024088	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8024589	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8026521	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8028258	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs8028890	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8029036	0.80[ASN][1000 genomes]
rs8040991	0.86[AMR][1000 genomes]
rs8041268	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs919059	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9635308	0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs990665	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2570233	SCG3	cis	Cerebellum	GTEx
rs2570233	SCG3	cis	Frontal Cortex	GTEx
rs2570233	SCG3	cis	Temporal Cortex	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52121200-52123000	Active TSS	Esophagus	oesophagus
2	chr15:52121200-52123200	Active TSS	Colon Smooth Muscle	Colon
3	chr15:52121400-52122000	Enhancers	Fetal Heart	heart
4	chr15:52121400-52122400	Active TSS	Primary T helper cells fromperipheralblood	blood
5	chr15:52121400-52122400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:52121400-52122600	Active TSS	Adipose Nuclei	Adipose
7	chr15:52121400-52122600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr15:52121400-52122600	Active TSS	Thymus	Thymus
9	chr15:52121400-52122800	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr15:52121400-52123000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:52121400-52123000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:52121400-52123000	Active TSS	Brain Cingulate Gyrus	brain
13	chr15:52121400-52123000	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr15:52121400-52123200	Active TSS	Brain Angular Gyrus	brain
15	chr15:52121400-52123400	Active TSS	Rectal Smooth Muscle	rectum
16	chr15:52121400-52123600	Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr15:52121400-52123800	Active TSS	Stomach Smooth Muscle	stomach
18	chr15:52121400-52124200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:52121600-52122000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:52121600-52122400	Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr15:52121600-52122400	Active TSS	Primary B cells from cord blood	blood
22	chr15:52121600-52122600	Active TSS	Primary hematopoietic stem cells	blood
23	chr15:52121600-52122600	Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr15:52121600-52122600	Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr15:52121600-52122600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
26	chr15:52121600-52122800	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr15:52121600-52122800	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr15:52121600-52122800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:52121600-52122800	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr15:52121600-52122800	Active TSS	Fetal Kidney	kidney
31	chr15:52121600-52122800	Active TSS	HUVEC	blood vessel
32	chr15:52121600-52122800	Active TSS	Monocytes-CD14+_RO01746	blood
33	chr15:52121600-52122800	Active TSS	Osteobl	bone
34	chr15:52121600-52123000	Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr15:52121600-52123000	Active TSS	Primary T cells from cord blood	blood
36	chr15:52121600-52123000	Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr15:52121600-52123000	Active TSS	Brain Anterior Caudate	brain
38	chr15:52121600-52123000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:52121600-52123000	Active TSS	Duodenum Mucosa	Duodenum
40	chr15:52121600-52123000	Active TSS	Fetal Muscle Trunk	muscle
41	chr15:52121600-52123200	Active TSS	H1 Cell Line	embryonic stem cell
42	chr15:52121600-52123200	Active TSS	Aorta	Aorta
43	chr15:52121600-52123200	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr15:52121600-52123200	Active TSS	Right Ventricle	heart
45	chr15:52121600-52123200	Active TSS	HSMMtube	muscle
46	chr15:52121600-52123400	Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr15:52121600-52123400	Active TSS	Colonic Mucosa	Colon
48	chr15:52121600-52123400	Active TSS	GM12878-XiMat	blood
49	chr15:52121600-52123400	Active TSS	NHDF-Ad	bronchial
50	chr15:52121600-52123600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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