Variant report

Variant	rs2570237
Chromosome Location	chr15:52128880-52128881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52127762..52132113-chr15:52143780..52145866,4	K562	blood:
2	chr15:51913237..51915267-chr15:52127501..52129437,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104093	Chromatin interaction

Extended variants
information (count: 168 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:167)

rs_ID	r²[population]
rs1025184	0.80[AMR][1000 genomes]
rs1035739	0.83[ASN][1000 genomes]
rs10444798	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10444823	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10775145	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11070864	0.82[EUR][1000 genomes]
rs11630084	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11632106	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11636345	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11638161	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11638766	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11638820	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12438686	0.93[ASN][1000 genomes]
rs12903707	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12905283	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12917133	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1350174	0.82[EUR][1000 genomes]
rs1545602	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17612123	0.80[AMR][1000 genomes]
rs17705732	0.95[ASN][1000 genomes]
rs1811326	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1867984	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1895863	0.90[ASN][1000 genomes]
rs1902430	0.82[EUR][1000 genomes]
rs1972689	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2006772	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2006773	0.87[AMR][1000 genomes]
rs2014638	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2034857	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2034858	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2052705	0.85[AMR][1000 genomes]
rs2052706	0.85[AMR][1000 genomes]
rs2052709	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2077743	0.82[EUR][1000 genomes]
rs2241503	0.83[ASN][1000 genomes]
rs2252606	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2252831	0.88[AMR][1000 genomes]
rs2253116	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2264339	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2303443	0.93[EUR][1000 genomes]
rs2414117	0.82[EUR][1000 genomes]
rs2414119	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2433222	0.80[AMR][1000 genomes]
rs2436657	0.81[AMR][1000 genomes]
rs2436658	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2436661	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2436662	0.88[AMR][1000 genomes]
rs2470602	0.83[ASN][1000 genomes]
rs2470603	0.83[ASN][1000 genomes]
rs2470604	0.80[ASN][1000 genomes]
rs2470605	0.81[ASN][1000 genomes]
rs2470607	0.81[ASN][1000 genomes]
rs2470616	0.80[AMR][1000 genomes]
rs2470619	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554305	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2554306	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2554307	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2554308	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2554315	0.91[ASN][1000 genomes]
rs2554322	0.81[AMR][1000 genomes]
rs2554327	0.87[AMR][1000 genomes]
rs2554328	0.85[AMR][1000 genomes]
rs2554332	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2554334	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554336	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554342	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2554345	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554349	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2554350	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2554353	0.89[AMR][1000 genomes]
rs2570224	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2570228	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2570231	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2570233	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2570235	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2570236	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2570238	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2570239	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2570240	0.89[AMR][1000 genomes]
rs2570241	0.89[AMR][1000 genomes]
rs2570248	0.88[AMR][1000 genomes]
rs2570251	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2570252	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2570253	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2570258	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2570260	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2570263	0.83[ASN][1000 genomes]
rs2570268	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2570269	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2570271	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2570275	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2593167	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2593173	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2593179	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2593182	0.85[AMR][1000 genomes]
rs2593183	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2593185	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2593187	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2593191	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2593194	0.80[AMR][1000 genomes]
rs2593198	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2593202	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2593204	0.83[ASN][1000 genomes]
rs2623254	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2623259	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2623262	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2623266	0.85[AMR][1000 genomes]
rs2623271	0.87[AMR][1000 genomes]
rs2623279	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2623281	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2623282	0.81[AMR][1000 genomes]
rs2623283	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2623284	0.81[AMR][1000 genomes]
rs2623285	0.81[AMR][1000 genomes]
rs2623286	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2623288	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2623289	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2959302	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3110553	0.80[AMR][1000 genomes]
rs3751596	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3794530	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3794534	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3794535	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3794536	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4238383	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4502160	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4534783	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4622456	0.82[EUR][1000 genomes]
rs4774602	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4775978	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4775982	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775983	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55843525	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55887408	0.90[EUR][1000 genomes]
rs58758283	0.95[ASN][1000 genomes]
rs60329909	0.94[ASN][1000 genomes]
rs6493518	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6493519	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6493522	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6493523	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67895020	0.93[EUR][1000 genomes]
rs689884	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs689922	0.85[ASN][1000 genomes]
rs690287	0.86[ASN][1000 genomes]
rs690638	0.86[ASN][1000 genomes]
rs7162554	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7163176	0.82[EUR][1000 genomes]
rs7165585	0.82[EUR][1000 genomes]
rs7166110	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7171459	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7173375	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7174941	0.92[EUR][1000 genomes]
rs7176421	0.90[ASN][1000 genomes]
rs7181553	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7182917	0.90[EUR][1000 genomes]
rs72732952	0.89[ASN][1000 genomes]
rs8024081	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8024088	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8024589	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8026521	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8028258	0.82[EUR][1000 genomes]
rs8028890	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8040991	0.86[AMR][1000 genomes]
rs8041268	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs919059	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9635308	0.85[ASN][1000 genomes]
rs990665	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52122800-52129800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:52123000-52129800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:52123000-52129800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:52123000-52130000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr15:52123000-52134000	Weak transcription	Pancreas	Pancrea
6	chr15:52123200-52129600	Weak transcription	Brain Angular Gyrus	brain
7	chr15:52123200-52129600	Weak transcription	Brain Substantia Nigra	brain
8	chr15:52123200-52129800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:52123200-52129800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:52123200-52129800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:52123200-52129800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:52123200-52129800	Weak transcription	Right Ventricle	heart
13	chr15:52123400-52129000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:52123400-52129200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:52123400-52129600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:52123400-52129600	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:52123400-52133600	Weak transcription	Colonic Mucosa	Colon
18	chr15:52123600-52129600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:52123600-52140000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr15:52123800-52129400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:52123800-52129600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:52123800-52129800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr15:52123800-52130000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr15:52124000-52129000	Weak transcription	Brain Anterior Caudate	brain
25	chr15:52124000-52129800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:52124200-52129000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:52124200-52129600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:52124200-52129600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:52124200-52129600	Weak transcription	Fetal Stomach	stomach
30	chr15:52124200-52129800	Weak transcription	Brain Hippocampus Middle	brain
31	chr15:52124200-52129800	Weak transcription	Fetal Intestine Large	intestine
32	chr15:52124200-52129800	Weak transcription	Fetal Intestine Small	intestine
33	chr15:52124200-52129800	Weak transcription	Psoas Muscle	Psoas
34	chr15:52124200-52132200	Weak transcription	Fetal Brain Male	brain
35	chr15:52124200-52134600	Weak transcription	HSMM	muscle
36	chr15:52124200-52134800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr15:52124200-52135000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr15:52124200-52135000	Weak transcription	Aorta	Aorta
39	chr15:52124200-52135400	Weak transcription	Thymus	Thymus
40	chr15:52124800-52129600	Weak transcription	Fetal Thymus	thymus
41	chr15:52124800-52130000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr15:52125000-52129000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:52125000-52129600	Weak transcription	Primary B cells from cord blood	blood
44	chr15:52125000-52129600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr15:52125000-52129800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr15:52125000-52129800	Weak transcription	Liver	Liver
47	chr15:52125000-52137600	Weak transcription	Lung	lung
48	chr15:52125200-52129000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:52125200-52129400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:52125200-52129400	Weak transcription	Primary B cells from peripheral blood	blood

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