Variant report

Variant	rs1867984
Chromosome Location	chr15:52171481-52171482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52120856..52122449-chr15:52170114..52171690,2	MCF-7	breast:
2	chr15:52165236..52168790-chr15:52169644..52172296,4	K562	blood:
3	chr15:52170839..52173491-chr15:52183547..52186531,2	MCF-7	breast:
4	chr15:52165236..52167246-chr15:52169644..52172296,2	K562	blood:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 193 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:191)

rs_ID	r²[population]
rs1001690	0.82[CHB][hapmap]
rs1025184	0.95[CHB][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1035739	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10444798	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10444823	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10775145	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11049	0.80[CEU][hapmap]
rs1133882	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs11630084	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11632106	0.83[ASN][1000 genomes]
rs11636345	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11638161	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11638766	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11638820	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12438686	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12902346	0.80[AMR][1000 genomes]
rs12903707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12905283	0.91[CHB][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12917133	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1350174	0.96[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs1466276	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs1545602	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17612123	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17705732	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1811326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1895863	0.99[ASN][1000 genomes]
rs1902430	0.96[CEU][hapmap]
rs1972689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2006772	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2006773	0.82[CHB][hapmap];0.90[AMR][1000 genomes]
rs2009972	0.91[CHB][hapmap]
rs2014638	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2034857	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2034858	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2052705	0.82[CHB][hapmap];0.88[AMR][1000 genomes]
rs2052706	0.81[CHB][hapmap];0.88[AMR][1000 genomes]
rs2052709	0.95[CHB][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2077743	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs2241503	1.00[CHB][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2252606	1.00[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2252831	0.81[CHB][hapmap];0.92[AMR][1000 genomes]
rs2253116	1.00[CHB][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2264339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2303443	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2414117	0.80[EUR][1000 genomes]
rs2414119	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2433222	0.83[AMR][1000 genomes]
rs2436657	0.84[AMR][1000 genomes]
rs2436658	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2436661	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2436662	0.92[AMR][1000 genomes]
rs2470602	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2470603	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2470604	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2470605	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2470607	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2470616	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2470617	0.85[CHB][hapmap]
rs2470619	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2554305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554306	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2554315	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2554322	0.84[AMR][1000 genomes]
rs2554327	0.82[CHB][hapmap];0.91[AMR][1000 genomes]
rs2554328	0.89[AMR][1000 genomes]
rs2554332	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2554334	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554342	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2554345	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554348	0.84[YRI][hapmap]
rs2554349	0.95[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2554350	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2554353	0.93[AMR][1000 genomes]
rs2554354	0.82[CEU][hapmap]
rs2554355	0.81[CEU][hapmap]
rs2570224	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2570231	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2570233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2570235	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2570236	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2570237	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2570238	0.98[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2570239	0.82[CHB][hapmap];0.94[AMR][1000 genomes]
rs2570240	0.93[AMR][1000 genomes]
rs2570241	0.93[AMR][1000 genomes]
rs2570243	0.83[CEU][hapmap]
rs2570248	0.92[AMR][1000 genomes]
rs2570251	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2570252	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570253	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2570260	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2570263	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2570268	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2570269	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2570271	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2570275	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2593167	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2593168	0.81[AMR][1000 genomes]
rs2593169	0.83[CEU][hapmap]
rs2593170	0.82[CHB][hapmap];0.80[AMR][1000 genomes]
rs2593173	1.00[CHB][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2593179	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2593182	0.88[AMR][1000 genomes]
rs2593183	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2593185	0.95[CHB][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2593187	1.00[CHB][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2593188	0.82[CHB][hapmap]
rs2593191	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593194	0.81[AMR][1000 genomes]
rs2593198	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2593202	1.00[CHB][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2593204	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2623245	0.81[CEU][hapmap]
rs2623247	0.83[CEU][hapmap]
rs2623251	0.85[CEU][hapmap]
rs2623254	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2623255	0.82[CHB][hapmap];0.80[AMR][1000 genomes]
rs2623259	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2623262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2623263	0.85[CEU][hapmap]
rs2623266	0.88[AMR][1000 genomes]
rs2623271	0.82[CHB][hapmap];0.91[AMR][1000 genomes]
rs2623279	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2623281	1.00[CHB][hapmap];0.97[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2623282	0.83[CHB][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes]
rs2623283	1.00[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2623284	0.84[AMR][1000 genomes]
rs2623285	0.84[AMR][1000 genomes]
rs2623286	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2623288	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2623289	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2959302	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3110553	0.81[AMR][1000 genomes]
rs3751596	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3794530	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3794534	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3794535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3794536	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4238383	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4502160	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4534783	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4622456	1.00[CEU][hapmap]
rs4774602	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4775978	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4775982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775983	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55843525	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55887408	0.88[EUR][1000 genomes]
rs58758283	0.94[ASN][1000 genomes]
rs59808035	0.83[ASN][1000 genomes]
rs60329909	0.94[ASN][1000 genomes]
rs6493518	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6493519	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493522	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493523	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67895020	0.98[EUR][1000 genomes]
rs689884	0.92[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs689922	0.86[ASN][1000 genomes]
rs690287	0.87[ASN][1000 genomes]
rs690638	0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs7162554	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7163176	0.80[EUR][1000 genomes]
rs7165283	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7165585	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs7166110	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7168659	0.82[CHB][hapmap]
rs7171459	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7173375	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7174941	0.91[EUR][1000 genomes]
rs7176421	0.99[ASN][1000 genomes]
rs7178561	0.83[CHB][hapmap]
rs7181553	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7182917	0.88[EUR][1000 genomes]
rs72732952	0.98[ASN][1000 genomes]
rs8024081	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8024088	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8024589	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8026521	0.83[AMR][1000 genomes]
rs8028258	1.00[CEU][hapmap]
rs8028890	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8029036	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8040991	0.90[AMR][1000 genomes]
rs8041268	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs919059	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9635308	0.91[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs990665	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1867984	SCG3	cis	Brain Pons	GTEx
rs1867984	SCG3	cis	Frontal Cortex	GTEx
rs1867984	SCG3	cis	Temporal Cortex	GTEx
rs1867984	SCG3	cis	Cerebellum	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52141800-52176200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:52145800-52176600	Weak transcription	Psoas Muscle	Psoas
3	chr15:52148200-52176200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:52153800-52178000	Weak transcription	Brain Germinal Matrix	brain
5	chr15:52155000-52173600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr15:52155600-52192000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:52156000-52211000	Weak transcription	Brain Substantia Nigra	brain
8	chr15:52157800-52178000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:52161600-52176000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:52163000-52186800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:52163200-52184200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:52163400-52181400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:52163400-52186200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:52165200-52181800	Weak transcription	Esophagus	oesophagus
15	chr15:52165400-52175800	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:52165800-52183600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr15:52167200-52176400	Weak transcription	Aorta	Aorta
18	chr15:52167200-52176600	Weak transcription	Colonic Mucosa	Colon
19	chr15:52167200-52186200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:52167200-52210800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:52167600-52175400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:52167600-52177000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:52167600-52177000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:52167600-52192000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:52167600-52199600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr15:52167800-52176800	Weak transcription	Dnd41	blood
27	chr15:52167800-52181400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr15:52167800-52188600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:52168200-52183200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr15:52168400-52176000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:52168600-52172000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr15:52168600-52188600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:52168800-52183800	Weak transcription	Fetal Thymus	thymus
34	chr15:52169200-52179600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:52169400-52179800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr15:52169800-52181200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr15:52170000-52172200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:52170000-52172200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:52170000-52172200	Enhancers	Fetal Lung	lung
40	chr15:52170000-52172400	Enhancers	Stomach Mucosa	stomach
41	chr15:52170000-52173200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:52170000-52173400	Enhancers	NHDF-Ad	bronchial
43	chr15:52170000-52173600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:52170200-52171800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:52170200-52172000	Enhancers	Adipose Nuclei	Adipose
46	chr15:52170200-52172400	Enhancers	Duodenum Mucosa	Duodenum
47	chr15:52170200-52173200	Enhancers	HUVEC	blood vessel
48	chr15:52170200-52173400	Enhancers	NHLF	lung
49	chr15:52170400-52172200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:52170400-52172200	Enhancers	Fetal Heart	heart

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