Variant report

Variant	rs11638820
Chromosome Location	chr15:52045368-52045369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:52045035-52045655	HL-60	blood:	n/a	n/a
2	MXI1	chr15:52042784-52045538	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:52028180..52031136-chr15:52040562..52045385,6	MCF-7	breast:
2	chr15:51913469..51917109-chr15:52042794..52045514,3	MCF-7	breast:
3	chr15:52027363..52032665-chr15:52041435..52046045,23	MCF-7	breast:
4	chr15:52028355..52032748-chr15:52040539..52046492,10	K562	blood:

Variant related genes	Relation type
LYSMD2	TF binding region
ENSG00000104093	Chromatin interaction
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 176 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs1001690	0.81[CHB][hapmap]
rs1035737	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs10444798	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10444823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10775145	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070864	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11070865	0.86[GIH][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes]
rs11070868	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs1133882	0.96[CEU][hapmap]
rs11630084	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11630943	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs11632106	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11636345	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11637876	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs11638161	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11638766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438686	0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs12903707	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12905283	0.83[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs12908327	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs12917133	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1350174	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1466276	0.92[CEU][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1545602	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17526463	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs17526760	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs17611193	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs17705732	0.90[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1811326	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1840708	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs1867984	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1895863	0.83[ASN][1000 genomes]
rs1902430	0.88[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1972689	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2006772	0.87[EUR][1000 genomes]
rs2007355	0.93[GIH][hapmap];0.87[TSI][hapmap]
rs2009972	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs2014638	1.00[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs2034856	0.83[ASW][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs2034857	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2034858	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2052709	0.90[CHB][hapmap]
rs2077743	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2114191	0.86[GIH][hapmap];0.87[TSI][hapmap]
rs2252606	0.95[CHB][hapmap]
rs2252831	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs2253116	0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap]
rs2264339	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2303443	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs2414116	0.89[GIH][hapmap];0.98[LWK][hapmap];0.91[MKK][hapmap];0.86[AFR][1000 genomes]
rs2414117	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2414119	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2414122	0.83[GIH][hapmap]
rs2433217	0.88[GIH][hapmap];0.85[TSI][hapmap]
rs2433221	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2436660	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2436661	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2441780	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2448946	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2470612	0.85[TSI][hapmap]
rs2470619	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2554305	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554306	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554307	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554308	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554315	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2554327	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs2554332	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2554334	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2554336	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2554345	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2554349	0.90[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap]
rs2554354	0.84[CEU][hapmap]
rs2554355	0.82[CEU][hapmap]
rs2570224	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs2570228	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2570231	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2570233	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2570235	0.88[EUR][1000 genomes]
rs2570236	0.87[EUR][1000 genomes]
rs2570237	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2570238	0.81[ASN][1000 genomes]
rs2570239	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs2570241	0.93[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs2570243	0.85[CEU][hapmap]
rs2570251	0.87[EUR][1000 genomes]
rs2570252	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2570253	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2570258	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2570260	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2593169	0.85[CEU][hapmap]
rs2593170	0.91[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs2593173	0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap]
rs2593191	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2593202	0.95[CHB][hapmap]
rs2623245	0.82[CEU][hapmap]
rs2623247	0.85[CEU][hapmap]
rs2623251	0.85[CEU][hapmap]
rs2623254	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2623259	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2623262	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2623263	0.85[CEU][hapmap]
rs2623270	0.82[CEU][hapmap]
rs2623271	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs2623281	0.95[CHB][hapmap]
rs2623283	0.95[CHB][hapmap]
rs2912189	0.91[GIH][hapmap];0.85[TSI][hapmap]
rs2916172	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2916176	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2916177	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2929425	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2929426	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2959285	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2959298	0.86[GIH][hapmap];0.87[TSI][hapmap]
rs2959299	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs3088312	0.86[AMR][1000 genomes]
rs3751596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3794530	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3794534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3794535	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.83[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3794536	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4238383	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4502160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534783	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4622456	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4774602	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4775978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4775982	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4775983	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55843525	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55887408	0.90[EUR][1000 genomes]
rs58758283	0.87[ASN][1000 genomes]
rs60329909	0.88[ASN][1000 genomes]
rs6493515	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6493518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493519	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6493520	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs6493522	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493523	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493525	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs6493526	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs67895020	0.84[EUR][1000 genomes]
rs689884	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs689922	0.96[ASN][1000 genomes]
rs690287	0.94[ASN][1000 genomes]
rs690638	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7163176	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7165283	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7165585	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[GIH][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7166110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7166962	0.89[AMR][1000 genomes]
rs7168659	0.81[CHB][hapmap];0.89[AMR][1000 genomes]
rs7171459	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7173375	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7174497	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs7174808	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs7174941	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7176421	0.84[ASN][1000 genomes]
rs7179599	0.83[YRI][hapmap]
rs7181553	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7182917	0.87[EUR][1000 genomes]
rs72732952	0.83[ASN][1000 genomes]
rs8024081	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8024088	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8024589	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8026521	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs8027721	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8028258	0.88[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8028890	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8028922	0.91[GIH][hapmap];0.87[TSI][hapmap];0.86[YRI][hapmap]
rs8035173	0.83[GIH][hapmap]
rs8041268	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs919059	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9635308	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs11638820	SCG3	cis	Frontal Cortex	GTEx
rs11638820	SCG3	cis	Brain Pons	GTEx
rs11638820	SCG3	cis	Cerebellum	GTEx
rs11638820	SCG3	cis	cerebellum	SCAN
rs11638820	TMOD2	cis	parietal	SCAN
rs11638820	SCG3	cis	Temporal Cortex	GTEx
rs11638820	GNB5	cis	lymphoblastoid	seeQTL
rs11638820	LYSMD2	cis	Muscle Skeletal	GTEx

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52044200-52045800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr15:52044400-52045800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:52044400-52046400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr15:52044400-52050800	Weak transcription	Gastric	stomach
5	chr15:52044600-52045400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:52044600-52045400	Enhancers	Left Ventricle	heart
7	chr15:52044600-52045600	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr15:52044600-52045600	Flanking Active TSS	Brain Hippocampus Middle	brain
9	chr15:52044600-52046800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr15:52044600-52060000	Weak transcription	Esophagus	oesophagus
11	chr15:52044600-52060200	Weak transcription	Aorta	Aorta
12	chr15:52044800-52045400	Enhancers	Duodenum Mucosa	Duodenum
13	chr15:52044800-52045600	Enhancers	K562	blood
14	chr15:52044800-52046000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:52044800-52046800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr15:52044800-52047600	Weak transcription	Placenta	Placenta
17	chr15:52044800-52047600	Weak transcription	Lung	lung
18	chr15:52044800-52047800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:52044800-52049800	Weak transcription	Psoas Muscle	Psoas
20	chr15:52044800-52050600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:52044800-52051000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:52044800-52051000	Weak transcription	Right Ventricle	heart
23	chr15:52044800-52060000	Weak transcription	Spleen	Spleen
24	chr15:52045000-52045400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
25	chr15:52045000-52045400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr15:52045000-52045400	Enhancers	Fetal Brain Male	brain
27	chr15:52045000-52045400	Flanking Active TSS	Fetal Brain Female	brain
28	chr15:52045000-52045400	Active TSS	Stomach Smooth Muscle	stomach
29	chr15:52045000-52045400	Enhancers	GM12878-XiMat	blood
30	chr15:52045000-52045600	Enhancers	Adipose Nuclei	Adipose
31	chr15:52045000-52045600	Enhancers	Colon Smooth Muscle	Colon
32	chr15:52045000-52045600	Enhancers	Right Atrium	heart
33	chr15:52045000-52045800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr15:52045000-52045800	Bivalent/Poised TSS	Primary B cells from cord blood	blood
35	chr15:52045000-52046200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr15:52045000-52046400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr15:52045000-52046800	Enhancers	Fetal Thymus	thymus
38	chr15:52045000-52047000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:52045000-52049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:52045000-52049800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:52045000-52050600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:52045000-52050800	Weak transcription	HMEC	breast
43	chr15:52045000-52060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:52045200-52045400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:52045200-52045400	Active TSS	Brain Angular Gyrus	brain
46	chr15:52045200-52045400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr15:52045200-52045400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr15:52045200-52045400	Enhancers	Rectal Smooth Muscle	rectum
49	chr15:52045200-52045600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:52045200-52045800	Flanking Active TSS	Brain Cingulate Gyrus	brain

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