Variant report

Variant	rs2014638
Chromosome Location	chr15:52122914-52122915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:50716224..50718029-chr15:52121423..52123385,2	MCF-7	breast:
2	chr15:52121304..52123293-chr15:52174334..52178063,3	MCF-7	breast:
3	chr15:52122119..52124469-chr15:52144206..52147275,3	MCF-7	breast:
4	chr15:52029378..52032499-chr15:52121077..52123299,3	MCF-7	breast:
5	chr15:51532110..51534876-chr15:52120989..52123344,2	MCF-7	breast:
6	chr15:52121176..52123509-chr15:52196902..52200014,3	MCF-7	breast:
7	chr15:52072025..52074741-chr15:52120265..52123225,4	MCF-7	breast:
8	chr15:52120762..52123532-chr15:52245423..52248138,2	MCF-7	breast:
9	chr15:52042996..52044811-chr15:52120947..52123164,2	MCF-7	breast:
10	chr15:52120607..52125174-chr15:52151783..52155506,6	MCF-7	breast:
11	chr15:52122324..52123110-chr17:80255919..80256835,2	Hela-S3	cervix:
12	chr15:52121756..52123415-chr15:52859545..52862503,2	MCF-7	breast:
13	chr15:52121865..52123444-chr15:52153947..52156621,2	MCF-7	breast:
14	chr15:52119461..52123475-chr15:52166022..52168353,4	MCF-7	breast:
15	chr15:51914529..51916927-chr15:52121179..52124043,2	MCF-7	breast:
16	chr15:52072694..52074758-chr15:52121019..52123367,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128989	Chromatin interaction
ENSG00000259632	Chromatin interaction
ENSG00000266593	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000207484	Chromatin interaction
ENSG00000138592	Chromatin interaction
ENSG00000272337	Chromatin interaction
ENSG00000166477	Chromatin interaction
ENSG00000140280	Chromatin interaction
ENSG00000138594	Chromatin interaction
ENSG00000259377	Chromatin interaction
ENSG00000104093	Chromatin interaction

Extended variants
information (count: 204 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:203)

rs_ID	r²[population]
rs1025184	0.86[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs1035737	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs10444798	0.87[EUR][1000 genomes]
rs10444823	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10775145	1.00[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11070864	0.84[EUR][1000 genomes]
rs11070865	0.90[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs11070868	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs1133882	0.96[CEU][hapmap]
rs1133883	0.85[CHB][hapmap]
rs11630084	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11630943	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs11632106	0.82[EUR][1000 genomes]
rs11636345	1.00[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11637876	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs11638161	0.91[EUR][1000 genomes]
rs11638766	0.88[EUR][1000 genomes]
rs11638820	1.00[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs12903707	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12905283	0.89[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes]
rs12908327	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs12917133	0.96[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1350174	0.96[CEU][hapmap];0.89[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs1466276	0.92[CEU][hapmap]
rs1545602	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17526463	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs17526760	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs17611193	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs1811326	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1840708	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs1867984	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1902430	0.96[CEU][hapmap];0.88[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs1972689	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.82[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2006772	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2006773	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2007355	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs2009972	0.82[TSI][hapmap]
rs2011995	0.89[YRI][hapmap]
rs2034856	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs2034857	1.00[CEU][hapmap];0.90[GIH][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2034858	1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2052705	1.00[CHB][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2052706	1.00[CHB][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2052709	0.82[AMR][1000 genomes]
rs2077743	1.00[CEU][hapmap];0.88[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs2114191	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs2241503	0.82[CHB][hapmap];0.86[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs2252606	0.81[CHB][hapmap]
rs2252831	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2253116	0.82[CHB][hapmap];0.88[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs2264339	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2303443	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs2414116	0.91[GIH][hapmap]
rs2414117	0.84[EUR][1000 genomes]
rs2414119	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2414122	0.81[GIH][hapmap]
rs2433217	0.85[GIH][hapmap];0.87[TSI][hapmap]
rs2433221	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs2433222	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2436657	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2436660	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs2436661	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2436662	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2441780	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2448946	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs2470612	0.87[TSI][hapmap]
rs2470617	0.81[GIH][hapmap];0.84[TSI][hapmap]
rs2470619	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2554305	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2554306	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2554307	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2554308	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2554322	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2554327	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2554328	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2554332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554334	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2554336	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2554342	0.80[AMR][1000 genomes]
rs2554345	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2554348	0.90[CHB][hapmap];0.96[YRI][hapmap]
rs2554349	0.91[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes]
rs2554350	0.86[AMR][1000 genomes]
rs2554353	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2554354	0.84[CEU][hapmap]
rs2554355	0.82[CEU][hapmap]
rs2570224	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2570228	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2570231	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2570233	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570235	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2570236	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2570237	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2570238	0.90[AMR][1000 genomes]
rs2570239	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.97[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2570240	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2570241	0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2570243	0.85[CEU][hapmap]
rs2570248	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2570251	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2570252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2570253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2570258	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2570260	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2570268	0.82[AMR][1000 genomes]
rs2570269	0.80[AMR][1000 genomes]
rs2570275	0.80[AMR][1000 genomes]
rs2593167	0.84[EUR][1000 genomes]
rs2593168	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2593169	0.85[CEU][hapmap]
rs2593170	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2593173	0.82[CHB][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes]
rs2593177	0.84[ASN][1000 genomes]
rs2593182	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2593183	0.86[AMR][1000 genomes]
rs2593185	0.84[YRI][hapmap];0.80[AMR][1000 genomes]
rs2593187	0.82[CHB][hapmap]
rs2593188	1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2593191	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2593198	0.80[AMR][1000 genomes]
rs2593199	0.95[CHB][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2593202	0.82[CHB][hapmap];0.80[AMR][1000 genomes]
rs2623243	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2623244	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2623245	0.82[CEU][hapmap]
rs2623247	0.85[CEU][hapmap]
rs2623251	0.85[CEU][hapmap]
rs2623254	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2623255	1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2623259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2623262	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2623263	0.85[CEU][hapmap]
rs2623266	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2623270	0.82[CEU][hapmap]
rs2623271	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2623279	0.82[AMR][1000 genomes]
rs2623281	0.81[CHB][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs2623282	1.00[CHB][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2623283	0.82[CHB][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs2623284	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2623285	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2623286	0.82[AMR][1000 genomes]
rs2623288	0.82[AMR][1000 genomes]
rs2623289	0.81[AMR][1000 genomes]
rs2912189	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs2916172	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs2916176	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs2916177	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs2929425	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs2929426	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs2959285	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs2959293	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs2959298	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs2959299	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs3751596	1.00[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3794530	0.88[EUR][1000 genomes]
rs3794534	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3794535	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3794536	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4238383	1.00[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs4502160	0.88[EUR][1000 genomes]
rs4534783	0.92[EUR][1000 genomes]
rs4622456	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4774602	0.96[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4775978	1.00[CEU][hapmap];0.80[CHB][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4775982	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4775983	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55843525	0.85[EUR][1000 genomes]
rs55887408	0.92[EUR][1000 genomes]
rs6493518	0.88[EUR][1000 genomes]
rs6493519	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6493520	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs6493522	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6493523	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6493525	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs6493526	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs67895020	0.94[EUR][1000 genomes]
rs689884	0.92[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs7162554	0.80[AMR][1000 genomes]
rs7163176	0.84[EUR][1000 genomes]
rs7165283	1.00[CEU][hapmap]
rs7165585	1.00[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs7166110	0.87[EUR][1000 genomes]
rs7171459	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7173375	0.84[EUR][1000 genomes]
rs7174497	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs7174808	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs7174941	0.94[EUR][1000 genomes]
rs7181553	1.00[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs7182917	0.92[EUR][1000 genomes]
rs8024081	0.92[EUR][1000 genomes]
rs8024088	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8024589	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8026521	0.80[AMR][1000 genomes]
rs8028258	1.00[CEU][hapmap];0.86[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs8028890	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8028922	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs8031045	0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[ASN][1000 genomes]
rs8035173	0.85[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap]
rs8040991	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8041268	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs919059	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs990665	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs2014638	SCG3	cis	cerebellum	SCAN
rs2014638	TRPM7	cis	parietal	SCAN
rs2014638	TMOD2	cis	parietal	SCAN
rs2014638	TMOD2	cis	cerebellum	SCAN
rs2014638	SCG3	cis	Temporal Cortex	GTEx
rs2014638	SCG3	cis	Cerebellum	GTEx
rs2014638	SCG3	cis	Frontal Cortex	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52121200-52123000	Active TSS	Esophagus	oesophagus
2	chr15:52121200-52123200	Active TSS	Colon Smooth Muscle	Colon
3	chr15:52121400-52123000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:52121400-52123000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:52121400-52123000	Active TSS	Brain Cingulate Gyrus	brain
6	chr15:52121400-52123000	Active TSS	Rectal Mucosa Donor 31	rectum
7	chr15:52121400-52123200	Active TSS	Brain Angular Gyrus	brain
8	chr15:52121400-52123400	Active TSS	Rectal Smooth Muscle	rectum
9	chr15:52121400-52123600	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr15:52121400-52123800	Active TSS	Stomach Smooth Muscle	stomach
11	chr15:52121400-52124200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:52121600-52123000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr15:52121600-52123000	Active TSS	Primary T cells from cord blood	blood
14	chr15:52121600-52123000	Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr15:52121600-52123000	Active TSS	Brain Anterior Caudate	brain
16	chr15:52121600-52123000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:52121600-52123000	Active TSS	Duodenum Mucosa	Duodenum
18	chr15:52121600-52123000	Active TSS	Fetal Muscle Trunk	muscle
19	chr15:52121600-52123200	Active TSS	H1 Cell Line	embryonic stem cell
20	chr15:52121600-52123200	Active TSS	Aorta	Aorta
21	chr15:52121600-52123200	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr15:52121600-52123200	Active TSS	Right Ventricle	heart
23	chr15:52121600-52123200	Active TSS	HSMMtube	muscle
24	chr15:52121600-52123400	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr15:52121600-52123400	Active TSS	Colonic Mucosa	Colon
26	chr15:52121600-52123400	Active TSS	GM12878-XiMat	blood
27	chr15:52121600-52123400	Active TSS	NHDF-Ad	bronchial
28	chr15:52121600-52123600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:52121600-52123600	Active TSS	Fetal Thymus	thymus
30	chr15:52121600-52123800	Active TSS	Right Atrium	heart
31	chr15:52121600-52123800	Active TSS	HSMM	muscle
32	chr15:52121600-52124200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:52121600-52124200	Active TSS	NHLF	lung
34	chr15:52121800-52123000	Active TSS	H9 Cell Line	embryonic stem cell
35	chr15:52121800-52123000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:52121800-52123000	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr15:52121800-52123000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr15:52121800-52123000	Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr15:52121800-52123000	Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr15:52121800-52123000	Active TSS	Brain Substantia Nigra	brain
41	chr15:52121800-52123000	Active TSS	Fetal Lung	lung
42	chr15:52121800-52123000	Active TSS	Left Ventricle	heart
43	chr15:52121800-52123000	Active TSS	Lung	lung
44	chr15:52121800-52123000	Active TSS	Pancreas	Pancrea
45	chr15:52121800-52123000	Active TSS	Sigmoid Colon	Sigmoid Colon
46	chr15:52121800-52123000	Active TSS	Small Intestine	intestine
47	chr15:52121800-52123000	Active TSS	Dnd41	blood
48	chr15:52121800-52123200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr15:52121800-52123200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr15:52121800-52123200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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