Variant report

Variant	rs2264339
Chromosome Location	chr15:52114698-52114699
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52091331..52093041-chr15:52113410..52115469,2	MCF-7	breast:
2	chr15:52114106..52115784-chr15:52121370..52123260,2	K562	blood:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 192 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:191)

rs_ID	r²[population]
rs1001690	0.81[CHB][hapmap]
rs1025184	0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1035739	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10444798	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10444823	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10775145	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11049	0.81[CEU][hapmap]
rs11070864	0.85[EUR][1000 genomes]
rs1133882	0.96[CEU][hapmap];0.82[CHB][hapmap]
rs11630084	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11632106	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11636345	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11638161	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11638766	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11638820	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12438686	0.91[CHB][hapmap];0.96[JPT][hapmap];0.97[ASN][1000 genomes]
rs12902346	0.81[AMR][1000 genomes]
rs12903707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12905283	0.90[CHB][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12917133	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1350174	0.96[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs1466276	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs1545602	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17612123	0.82[AMR][1000 genomes]
rs17705732	0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs1811326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1867984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1895863	0.93[ASN][1000 genomes]
rs1902430	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs1972689	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2006772	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2006773	0.82[CHB][hapmap];0.89[AMR][1000 genomes]
rs2009972	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs2014638	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2034857	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2034858	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2052705	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs2052706	0.81[CHB][hapmap];0.87[AMR][1000 genomes]
rs2052709	0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2077743	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs2241503	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2252606	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2252831	0.81[CHB][hapmap];0.90[AMR][1000 genomes]
rs2253116	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2303443	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2414117	0.85[EUR][1000 genomes]
rs2414119	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2433222	0.82[AMR][1000 genomes]
rs2436657	0.83[AMR][1000 genomes]
rs2436658	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2436661	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2436662	0.90[AMR][1000 genomes]
rs2470602	0.87[ASN][1000 genomes]
rs2470603	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2470604	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2470605	0.85[ASN][1000 genomes]
rs2470607	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2470616	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2470617	0.84[CHB][hapmap]
rs2470619	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2554305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554306	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554315	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2554322	0.83[AMR][1000 genomes]
rs2554327	0.81[CHB][hapmap];0.89[AMR][1000 genomes]
rs2554328	0.87[AMR][1000 genomes]
rs2554332	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2554334	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554336	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554342	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554345	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554349	0.95[CHB][hapmap];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554350	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554353	0.91[AMR][1000 genomes]
rs2554354	0.82[CEU][hapmap]
rs2554355	0.82[CEU][hapmap]
rs2570224	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2570228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2570231	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2570233	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2570235	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2570236	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2570237	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2570238	0.99[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2570239	0.81[CHB][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes]
rs2570240	0.91[AMR][1000 genomes]
rs2570241	0.91[AMR][1000 genomes]
rs2570243	0.83[CEU][hapmap]
rs2570248	0.90[AMR][1000 genomes]
rs2570251	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2570252	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2570253	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2570258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2570260	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2570263	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2570268	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2570269	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2570271	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2570275	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2593167	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2593168	0.80[AMR][1000 genomes]
rs2593169	0.83[CEU][hapmap]
rs2593170	0.81[CHB][hapmap]
rs2593173	1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2593179	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2593182	0.87[AMR][1000 genomes]
rs2593183	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2593185	0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2593187	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2593188	0.81[CHB][hapmap]
rs2593191	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2593194	0.82[AMR][1000 genomes]
rs2593198	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2593202	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2593204	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2623245	0.82[CEU][hapmap]
rs2623247	0.83[CEU][hapmap]
rs2623251	0.85[CEU][hapmap]
rs2623254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2623255	0.81[CHB][hapmap]
rs2623259	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2623262	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2623263	0.85[CEU][hapmap]
rs2623266	0.87[AMR][1000 genomes]
rs2623271	0.81[CHB][hapmap];0.89[AMR][1000 genomes]
rs2623279	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2623281	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2623282	0.82[CHB][hapmap];0.83[AMR][1000 genomes]
rs2623283	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2623284	0.83[AMR][1000 genomes]
rs2623285	0.83[AMR][1000 genomes]
rs2623286	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2623288	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2623289	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2959302	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3110553	0.82[AMR][1000 genomes]
rs34842090	0.80[AMR][1000 genomes]
rs3751596	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3794530	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3794534	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3794535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3794536	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4238383	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4502160	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4534783	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4622456	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4774602	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4775978	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4775982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775983	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55843525	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55887408	0.93[EUR][1000 genomes]
rs58758283	0.99[ASN][1000 genomes]
rs60329909	0.99[ASN][1000 genomes]
rs6493518	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493519	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6493522	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6493523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67895020	0.93[EUR][1000 genomes]
rs689884	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs689922	0.90[ASN][1000 genomes]
rs690287	0.91[ASN][1000 genomes]
rs690638	0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7162554	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7163176	0.85[EUR][1000 genomes]
rs7165283	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7165585	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs7166110	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7168659	0.81[CHB][hapmap]
rs7171459	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7173375	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7174941	0.95[EUR][1000 genomes]
rs7176421	0.94[ASN][1000 genomes]
rs7178561	0.82[CHB][hapmap]
rs7181553	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7182917	0.93[EUR][1000 genomes]
rs72732952	0.92[ASN][1000 genomes]
rs8024081	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8024088	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8024589	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8026521	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8028258	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs8028890	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8029036	0.81[AMR][1000 genomes]
rs8040991	0.88[AMR][1000 genomes]
rs8041268	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs919059	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9635308	0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs990665	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52107200-52121400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:52110600-52114800	Weak transcription	Fetal Stomach	stomach
3	chr15:52111400-52117400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:52114000-52117400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:52114000-52117400	Weak transcription	Lung	lung
6	chr15:52114000-52121200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:52114000-52121400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:52114000-52121600	Weak transcription	Aorta	Aorta
9	chr15:52114200-52121600	Weak transcription	Psoas Muscle	Psoas

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