Variant report

Variant	rs2554342
Chromosome Location	chr15:52230139-52230140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52223859..52226677-chr15:52229805..52233485,3	K562	blood:
2	chr15:52223859..52226689-chr15:52228375..52231305,2	K562	blood:
3	chr15:52229311..52232260-chr15:52262799..52264700,2	K562	blood:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction
ENSG00000166477	Chromatin interaction

Extended variants
information (count: 300 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:297)

rs_ID	r²[population]
rs1025184	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1035737	0.97[EUR][1000 genomes]
rs1035739	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10444798	0.82[ASN][1000 genomes]
rs10444823	0.86[ASN][1000 genomes]
rs10444824	0.85[EUR][1000 genomes]
rs10444825	0.84[EUR][1000 genomes]
rs10775145	0.84[ASN][1000 genomes]
rs10851503	0.94[EUR][1000 genomes]
rs10851504	0.90[EUR][1000 genomes]
rs11049	0.95[EUR][1000 genomes]
rs11070868	0.85[EUR][1000 genomes]
rs11070869	0.85[EUR][1000 genomes]
rs1135871	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11630253	0.98[EUR][1000 genomes]
rs11630579	0.85[EUR][1000 genomes]
rs11630943	0.85[EUR][1000 genomes]
rs11631858	0.84[EUR][1000 genomes]
rs11636345	0.81[ASN][1000 genomes]
rs11636869	0.88[EUR][1000 genomes]
rs11637876	0.87[EUR][1000 genomes]
rs11638161	0.84[ASN][1000 genomes]
rs11638677	0.97[EUR][1000 genomes]
rs12050524	0.84[EUR][1000 genomes]
rs12438686	0.87[ASN][1000 genomes]
rs12591672	0.97[EUR][1000 genomes]
rs12593708	0.94[EUR][1000 genomes]
rs12901638	0.90[EUR][1000 genomes]
rs12902346	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12903707	0.86[ASN][1000 genomes]
rs12904413	0.85[EUR][1000 genomes]
rs12904900	0.85[EUR][1000 genomes]
rs12905283	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12908327	0.92[EUR][1000 genomes]
rs12912928	0.88[EUR][1000 genomes]
rs12913583	0.87[EUR][1000 genomes]
rs12913850	0.94[EUR][1000 genomes]
rs12915015	0.92[EUR][1000 genomes]
rs12915568	0.92[EUR][1000 genomes]
rs12917133	0.81[ASN][1000 genomes]
rs1545602	0.80[ASN][1000 genomes]
rs17526463	0.87[EUR][1000 genomes]
rs17526760	0.92[EUR][1000 genomes]
rs17539905	0.98[EUR][1000 genomes]
rs17610862	0.85[EUR][1000 genomes]
rs17611193	0.87[EUR][1000 genomes]
rs17612102	0.93[EUR][1000 genomes]
rs17612123	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17705732	0.88[ASN][1000 genomes]
rs1811326	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1840708	0.81[EUR][1000 genomes]
rs1863430	0.87[EUR][1000 genomes]
rs1867984	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1895863	0.92[ASN][1000 genomes]
rs1972689	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2006772	0.82[AMR][1000 genomes]
rs2006773	0.94[EUR][1000 genomes]
rs2007335	0.94[EUR][1000 genomes]
rs2007355	0.94[EUR][1000 genomes]
rs2009972	0.84[ASN][1000 genomes]
rs2010026	0.83[EUR][1000 genomes]
rs2011995	0.94[EUR][1000 genomes]
rs2014638	0.80[AMR][1000 genomes]
rs2034856	0.85[EUR][1000 genomes]
rs2034857	0.83[ASN][1000 genomes]
rs2034858	0.83[ASN][1000 genomes]
rs2052705	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2052706	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2052708	0.92[EUR][1000 genomes]
rs2052709	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2114191	0.96[EUR][1000 genomes]
rs2241503	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2251135	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2252606	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2252831	0.94[EUR][1000 genomes]
rs2253116	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2264339	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2414119	0.88[ASN][1000 genomes]
rs2414122	0.97[EUR][1000 genomes]
rs2433217	0.95[EUR][1000 genomes]
rs2433220	0.81[EUR][1000 genomes]
rs2433221	0.96[EUR][1000 genomes]
rs2433222	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2436655	0.93[EUR][1000 genomes]
rs2436656	0.96[EUR][1000 genomes]
rs2436657	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2436658	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2436660	0.98[EUR][1000 genomes]
rs2436661	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2436662	0.94[EUR][1000 genomes]
rs2441780	0.97[EUR][1000 genomes]
rs2448946	0.95[EUR][1000 genomes]
rs2448947	0.97[EUR][1000 genomes]
rs2448948	0.98[EUR][1000 genomes]
rs2448949	0.94[EUR][1000 genomes]
rs2448950	0.98[EUR][1000 genomes]
rs2448951	0.98[EUR][1000 genomes]
rs2448953	0.97[EUR][1000 genomes]
rs2470590	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2470591	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2470600	0.98[EUR][1000 genomes]
rs2470601	0.97[EUR][1000 genomes]
rs2470602	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470603	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470604	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470605	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470607	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470608	0.98[EUR][1000 genomes]
rs2470610	0.97[EUR][1000 genomes]
rs2470611	0.98[EUR][1000 genomes]
rs2470612	0.97[EUR][1000 genomes]
rs2470616	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2470618	0.95[EUR][1000 genomes]
rs2470619	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2554305	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554306	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554307	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554308	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554314	0.86[EUR][1000 genomes]
rs2554315	0.85[ASN][1000 genomes]
rs2554322	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2554327	0.94[EUR][1000 genomes]
rs2554328	0.94[EUR][1000 genomes]
rs2554332	0.82[AMR][1000 genomes]
rs2554334	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2554336	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2554337	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2554345	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2554348	0.82[EUR][1000 genomes]
rs2554349	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554350	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554353	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2570224	0.82[AMR][1000 genomes]
rs2570228	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2570231	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2570233	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2570235	0.80[AMR][1000 genomes]
rs2570237	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2570238	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2570239	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2570240	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2570241	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2570248	0.94[EUR][1000 genomes]
rs2570251	0.82[AMR][1000 genomes]
rs2570252	0.82[AMR][1000 genomes]
rs2570253	0.82[AMR][1000 genomes]
rs2570258	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2570260	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2570263	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2570268	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2570269	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2570271	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2570275	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2593167	0.81[ASN][1000 genomes]
rs2593168	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2593170	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2593173	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2593177	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2593179	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2593182	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2593183	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2593185	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2593187	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2593188	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2593191	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2593194	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2593198	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2593199	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2593202	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2593204	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2623243	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2623244	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2623254	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2623255	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2623259	0.82[AMR][1000 genomes]
rs2623262	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2623266	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2623271	0.94[EUR][1000 genomes]
rs2623279	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2623281	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2623282	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2623283	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2623284	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2623285	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2623286	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2623288	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2623289	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2912186	0.97[EUR][1000 genomes]
rs2912187	0.95[EUR][1000 genomes]
rs2912188	0.97[EUR][1000 genomes]
rs2912189	0.95[EUR][1000 genomes]
rs2912190	0.84[EUR][1000 genomes]
rs2916169	0.97[EUR][1000 genomes]
rs2916170	0.94[EUR][1000 genomes]
rs2916171	0.94[EUR][1000 genomes]
rs2916172	0.97[EUR][1000 genomes]
rs2916175	0.95[EUR][1000 genomes]
rs2916176	0.95[EUR][1000 genomes]
rs2916177	0.98[EUR][1000 genomes]
rs2921951	0.96[EUR][1000 genomes]
rs2921953	0.96[EUR][1000 genomes]
rs2921957	0.87[EUR][1000 genomes]
rs2929422	0.97[EUR][1000 genomes]
rs2929423	0.97[EUR][1000 genomes]
rs2929424	0.95[EUR][1000 genomes]
rs2929425	0.97[EUR][1000 genomes]
rs2929426	0.97[EUR][1000 genomes]
rs2929428	0.98[EUR][1000 genomes]
rs2959285	0.96[EUR][1000 genomes]
rs2959289	0.95[EUR][1000 genomes]
rs2959291	0.97[EUR][1000 genomes]
rs2959292	0.97[EUR][1000 genomes]
rs2959293	0.97[EUR][1000 genomes]
rs2959298	0.97[EUR][1000 genomes]
rs2959299	0.96[EUR][1000 genomes]
rs2959300	0.96[EUR][1000 genomes]
rs2959302	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2959304	0.90[EUR][1000 genomes]
rs2959305	0.95[EUR][1000 genomes]
rs2959306	0.97[EUR][1000 genomes]
rs2959307	0.96[EUR][1000 genomes]
rs3110551	0.90[EUR][1000 genomes]
rs3110553	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34504520	0.85[EUR][1000 genomes]
rs34842090	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35270232	0.87[EUR][1000 genomes]
rs35823585	0.87[EUR][1000 genomes]
rs36087956	0.97[EUR][1000 genomes]
rs3751596	0.86[ASN][1000 genomes]
rs3794532	0.85[EUR][1000 genomes]
rs3794534	0.85[ASN][1000 genomes]
rs3794535	0.88[ASN][1000 genomes]
rs3794536	0.88[ASN][1000 genomes]
rs4365237	0.81[EUR][1000 genomes]
rs4774602	0.83[ASN][1000 genomes]
rs4775978	0.81[ASN][1000 genomes]
rs4775982	0.88[ASN][1000 genomes]
rs4775983	0.88[ASN][1000 genomes]
rs55843525	0.81[ASN][1000 genomes]
rs56148956	0.85[EUR][1000 genomes]
rs56185947	0.85[EUR][1000 genomes]
rs58758283	0.88[ASN][1000 genomes]
rs60329909	0.87[ASN][1000 genomes]
rs62015190	0.94[EUR][1000 genomes]
rs62016192	0.97[EUR][1000 genomes]
rs6493519	0.83[ASN][1000 genomes]
rs6493520	0.87[EUR][1000 genomes]
rs6493521	0.85[EUR][1000 genomes]
rs6493522	0.87[ASN][1000 genomes]
rs6493523	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6493525	0.88[EUR][1000 genomes]
rs6493526	0.89[EUR][1000 genomes]
rs689922	0.81[ASN][1000 genomes]
rs690287	0.82[ASN][1000 genomes]
rs690638	0.82[ASN][1000 genomes]
rs7162554	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7162925	0.95[EUR][1000 genomes]
rs7163541	0.93[EUR][1000 genomes]
rs7164961	0.85[EUR][1000 genomes]
rs7170091	0.85[EUR][1000 genomes]
rs7170910	0.90[EUR][1000 genomes]
rs7171459	0.88[ASN][1000 genomes]
rs7171516	0.85[EUR][1000 genomes]
rs7171796	0.87[EUR][1000 genomes]
rs7174497	0.81[EUR][1000 genomes]
rs7174808	0.81[EUR][1000 genomes]
rs7175017	0.81[EUR][1000 genomes]
rs7176421	0.93[ASN][1000 genomes]
rs7178166	0.81[EUR][1000 genomes]
rs7178561	0.88[EUR][1000 genomes]
rs7178776	0.87[EUR][1000 genomes]
rs7178940	0.86[EUR][1000 genomes]
rs7179599	0.85[EUR][1000 genomes]
rs726158	0.85[EUR][1000 genomes]
rs72732914	0.95[EUR][1000 genomes]
rs72732952	0.91[ASN][1000 genomes]
rs8024081	0.83[ASN][1000 genomes]
rs8024088	0.83[ASN][1000 genomes]
rs8024585	0.88[EUR][1000 genomes]
rs8024589	0.82[ASN][1000 genomes]
rs8025069	0.81[EUR][1000 genomes]
rs8026521	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8027721	0.80[EUR][1000 genomes]
rs8028486	0.87[EUR][1000 genomes]
rs8028890	0.81[ASN][1000 genomes]
rs8028922	0.85[EUR][1000 genomes]
rs8029036	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8033433	0.89[EUR][1000 genomes]
rs8035126	0.90[EUR][1000 genomes]
rs8038344	0.94[EUR][1000 genomes]
rs8040975	0.81[EUR][1000 genomes]
rs8040991	0.94[EUR][1000 genomes]
rs8041268	0.88[ASN][1000 genomes]
rs919059	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9635308	0.81[ASN][1000 genomes]
rs990665	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9944235	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1053788	chr15:52223389-52307138	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52179600-52259800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:52193400-52232800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:52193600-52233600	Weak transcription	Fetal Brain Male	brain
4	chr15:52194200-52231600	Weak transcription	Psoas Muscle	Psoas
5	chr15:52194400-52236800	Weak transcription	Fetal Kidney	kidney
6	chr15:52194400-52239000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:52196200-52234000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:52197000-52234200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:52197000-52234800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:52200400-52262200	Weak transcription	Stomach Mucosa	stomach
11	chr15:52201000-52238800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:52204800-52238800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:52210000-52233600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:52210000-52239000	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:52211200-52230400	Weak transcription	K562	blood
16	chr15:52211600-52237600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr15:52211600-52239200	Weak transcription	Right Ventricle	heart
18	chr15:52212400-52241600	Weak transcription	Small Intestine	intestine
19	chr15:52215200-52234000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr15:52216000-52238600	Weak transcription	Pancreas	Pancrea
21	chr15:52216400-52234200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:52217000-52231600	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:52217200-52231600	Weak transcription	Brain Substantia Nigra	brain
24	chr15:52217200-52238400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:52217200-52238800	Weak transcription	Brain Angular Gyrus	brain
26	chr15:52217600-52234200	Weak transcription	NHLF	lung
27	chr15:52217600-52238800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:52217800-52237400	Weak transcription	Aorta	Aorta
29	chr15:52217800-52237400	Weak transcription	Brain Anterior Caudate	brain
30	chr15:52217800-52239000	Weak transcription	Gastric	stomach
31	chr15:52218000-52243200	Weak transcription	Fetal Heart	heart
32	chr15:52218200-52234200	Weak transcription	Esophagus	oesophagus
33	chr15:52219400-52230400	Weak transcription	Placenta	Placenta
34	chr15:52221600-52233600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:52222600-52259800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr15:52222800-52236200	Strong transcription	Fetal Stomach	stomach
37	chr15:52223000-52233400	Weak transcription	HSMM	muscle
38	chr15:52223200-52232000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:52223200-52245400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:52223400-52234200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr15:52224000-52237400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr15:52224200-52233400	Weak transcription	NHDF-Ad	bronchial
43	chr15:52224200-52237200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr15:52225000-52232400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:52226000-52232200	Strong transcription	Duodenum Mucosa	Duodenum
46	chr15:52226000-52232400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:52226000-52232600	Strong transcription	Fetal Muscle Leg	muscle
48	chr15:52226000-52255200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:52226200-52230600	Strong transcription	Fetal Brain Female	brain
50	chr15:52226200-52232000	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links