Variant report

Variant	rs62015190
Chromosome Location	chr15:52264358-52264359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:100)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:100 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr15:52263446-52264432	SK-N-SH_RA	brain:	n/a	chr15:52264170-52264179 chr15:52264167-52264176 chr15:52264168-52264179
2	HA-E2F1	chr15:52263328-52264656	MCF-7	breast:	n/a	chr15:52264167-52264176
3	POLR2A	chr15:52263600-52264670	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr15:52263608-52264724	PANC-1	pancreas:	n/a	n/a
5	TAF1	chr15:52263417-52264425	MCF-7	breast:	n/a	n/a
6	GABPA	chr15:52263229-52264494	MCF-7	breast:	n/a	chr15:52263630-52263639 chr15:52264167-52264176 chr15:52263597-52263611
7	POLR2A	chr15:52263324-52264465	GM12892	blood:	n/a	n/a
8	POLR2A	chr15:52263338-52264518	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr15:52263357-52264416	HL-60	blood:	n/a	n/a
10	POLR2A	chr15:52263401-52264502	K562	blood:	n/a	n/a
11	POLR2A	chr15:52263428-52264543	PFSK-1	brain:	n/a	n/a
12	PML	chr15:52263376-52264442	GM12878	blood:	n/a	n/a
13	POLR2A	chr15:52263380-52264463	U87	brain:	n/a	n/a
14	HEY1	chr15:52263569-52264548	HepG2	liver:	n/a	chr15:52263801-52263816
15	TAF1	chr15:52263401-52264368	ECC-1	luminal epithelium:	n/a	n/a
16	REST	chr15:52263029-52264761	H1-neurons	neurons:	n/a	chr15:52263671-52263684 chr15:52263977-52263987
17	POLR2A	chr15:52263439-52264490	K562	blood:	n/a	n/a
18	MXI1	chr15:52262145-52264705	SK-N-SH	brain:	n/a	n/a
19	POLR2A	chr15:52263394-52264519	Hela-S3	cervix:	n/a	n/a
20	HCFC1	chr15:52262514-52264463	Hela-S3	cervix:	n/a	n/a
21	FOSL2	chr15:52263459-52264359	A549	lung:	n/a	chr15:52264170-52264179
22	TAF1	chr15:52263325-52264503	MCF-7	breast:	n/a	n/a
23	POLR2A	chr15:52263525-52264397	GM12878	blood:	n/a	n/a
24	POLR2A	chr15:52263583-52264442	GM12891	blood:	n/a	n/a
25	POLR2A	chr15:52263733-52264485	HUVEC	blood vessel:	n/a	n/a
26	POLR2A	chr15:52263175-52264373	K562	blood:	n/a	n/a
27	SIN3AK20	chr15:52263489-52264454	PANC-1	pancreas:	n/a	n/a
28	POLR2A	chr15:52263501-52264381	GM18505	blood:	n/a	n/a
29	TBP	chr15:52263694-52264369	HepG2	liver:	n/a	n/a
30	MYBL2	chr15:52263587-52264424	HepG2	liver:	n/a	n/a
31	MAX	chr15:52263059-52264518	MCF-7	breast:	n/a	n/a
32	POLR2A	chr15:52263596-52264586	HepG2	liver:	n/a	n/a
33	POLR2A	chr15:52263549-52264455	HUVEC	blood vessel:	n/a	n/a
34	POLR2A	chr15:52263683-52264413	HepG2	liver:	n/a	n/a
35	POLR2A	chr15:52263540-52264445	SK-N-SH	brain:	n/a	n/a
36	HEY1	chr15:52263493-52264481	K562	blood:	n/a	chr15:52263801-52263816
37	POLR2A	chr15:52263235-52264594	Hela-S3	cervix:	n/a	n/a
38	TAF1	chr15:52263269-52264466	H1-neurons	neurons:	n/a	n/a
39	ELF1	chr15:52263323-52264415	MCF-7	breast:	n/a	n/a
40	POLR2A	chr15:52263313-52264619	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr15:52263531-52264362	ECC-1	luminal epithelium:	n/a	n/a
42	POLR2A	chr15:52263326-52264451	Hela-S3	cervix:	n/a	n/a
43	POLR2A	chr15:52263263-52264378	Raji	blood:	n/a	n/a
44	MAX	chr15:52263383-52264498	K562	blood:	n/a	n/a
45	POLR2A	chr15:52263201-52264470	H1-neurons	neurons:	n/a	n/a
46	POLR2A	chr15:52263278-52264612	SK-N-MC	brain:	n/a	n/a
47	ELF1	chr15:52262923-52264541	MCF-7	breast:	n/a	n/a
48	POLR2A	chr15:52263455-52264466	MCF-7	breast:	n/a	n/a
49	CBX3	chr15:52263565-52264559	K562	blood:	n/a	n/a
50	POLR2A	chr15:52263575-52264361	HepG2	liver:	n/a	n/a

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52261233..52265470-chr15:52469433..52474401,7	MCF-7	breast:
2	chr15:52243665..52246508-chr15:52262168..52265352,3	MCF-7	breast:
3	chr15:52262145..52266701-chr15:52309209..52314377,19	MCF-7	breast:
4	chr15:52263277..52265007-chr15:52427883..52430038,2	MCF-7	breast:
5	chr15:52262628..52265811-chr15:52469801..52473537,4	MCF-7	breast:
6	chr15:52262398..52265193-chr15:52386264..52389426,3	MCF-7	breast:
7	chr15:52263208..52265625-chr15:52404085..52407650,4	MCF-7	breast:
8	chr15:52262270..52265607-chr15:52309730..52314612,10	K562	blood:
9	chr15:52244109..52249001-chr15:52262072..52265545,5	MCF-7	breast:
10	chr15:52264141..52265648-chr15:52426026..52428333,2	MCF-7	breast:
11	chr15:52262830..52265268-chr15:52372078..52374982,4	MCF-7	breast:
12	chr15:52073675..52076293-chr15:52262420..52265302,2	MCF-7	breast:
13	chr15:52264035..52264681-chr19:46498316..46499226,2	NB4	blood:
14	chr15:52259207..52267788-chr15:52308373..52314434,24	MCF-7	breast:
15	chr15:52262650..52264778-chr15:52432288..52435005,3	MCF-7	breast:
16	chr15:52262263..52265564-chr15:52309489..52315686,9	K562	blood:
17	chr15:52264304..52267297-chr15:52410135..52412517,2	MCF-7	breast:
18	chr15:52262407..52265136-chr15:52430706..52432521,2	MCF-7	breast:

No data

Variant related genes	Relation type
LEO1	TF binding region
ENSG00000137875	Chromatin interaction
ENSG00000259438	Chromatin interaction
ENSG00000259577	Chromatin interaction
ENSG00000069956	Chromatin interaction
ENSG00000069966	Chromatin interaction
ENSG00000242327	Chromatin interaction
ENSG00000259178	Chromatin interaction
ENSG00000166477	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000104983	Chromatin interaction

Extended variants
information (count: 220 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:215)

rs_ID	r²[population]
rs1025184	0.96[EUR][1000 genomes]
rs1035737	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1035739	0.89[EUR][1000 genomes]
rs10444824	0.82[EUR][1000 genomes]
rs10444825	0.81[EUR][1000 genomes]
rs10851503	0.88[EUR][1000 genomes]
rs10851504	0.85[EUR][1000 genomes]
rs11049	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11070868	0.82[EUR][1000 genomes]
rs11070869	0.82[EUR][1000 genomes]
rs1135871	0.81[EUR][1000 genomes]
rs11630253	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11630579	0.82[EUR][1000 genomes]
rs11630943	0.82[EUR][1000 genomes]
rs11631858	0.81[EUR][1000 genomes]
rs11636869	0.83[EUR][1000 genomes]
rs11637876	0.85[EUR][1000 genomes]
rs11638677	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12050524	0.82[EUR][1000 genomes]
rs12591672	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12593708	0.88[EUR][1000 genomes]
rs12901638	0.85[EUR][1000 genomes]
rs12902346	0.89[EUR][1000 genomes]
rs12904413	0.82[EUR][1000 genomes]
rs12904900	0.82[EUR][1000 genomes]
rs12905283	0.84[EUR][1000 genomes]
rs12908327	0.90[EUR][1000 genomes]
rs12912928	0.83[EUR][1000 genomes]
rs12913583	0.85[EUR][1000 genomes]
rs12913850	0.88[EUR][1000 genomes]
rs12915015	0.90[EUR][1000 genomes]
rs12915568	0.90[EUR][1000 genomes]
rs17526463	0.84[EUR][1000 genomes]
rs17526760	0.90[EUR][1000 genomes]
rs17539905	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17610862	0.82[EUR][1000 genomes]
rs17611193	0.84[EUR][1000 genomes]
rs17612102	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17612123	0.97[EUR][1000 genomes]
rs1863430	0.85[EUR][1000 genomes]
rs2006773	0.88[EUR][1000 genomes]
rs2007335	0.88[EUR][1000 genomes]
rs2007355	0.88[EUR][1000 genomes]
rs2010026	0.80[EUR][1000 genomes]
rs2011995	0.88[EUR][1000 genomes]
rs2034856	0.82[EUR][1000 genomes]
rs2052705	0.92[EUR][1000 genomes]
rs2052706	0.93[EUR][1000 genomes]
rs2052708	0.90[EUR][1000 genomes]
rs2052709	0.93[EUR][1000 genomes]
rs2114191	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2241503	0.89[EUR][1000 genomes]
rs2251135	0.90[EUR][1000 genomes]
rs2252606	0.92[EUR][1000 genomes]
rs2252831	0.88[EUR][1000 genomes]
rs2253116	0.94[EUR][1000 genomes]
rs2414122	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2433217	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2433220	0.82[EUR][1000 genomes]
rs2433221	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2433222	0.93[EUR][1000 genomes]
rs2436655	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2436656	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2436657	0.93[EUR][1000 genomes]
rs2436658	0.95[EUR][1000 genomes]
rs2436660	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2436662	0.88[EUR][1000 genomes]
rs2441780	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2448946	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2448947	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2448948	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2448949	0.90[EUR][1000 genomes]
rs2448950	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2448951	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2448953	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2470590	0.89[EUR][1000 genomes]
rs2470591	0.90[EUR][1000 genomes]
rs2470599	0.80[ASN][1000 genomes]
rs2470600	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2470601	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2470602	0.95[EUR][1000 genomes]
rs2470603	0.89[EUR][1000 genomes]
rs2470604	0.84[EUR][1000 genomes]
rs2470605	0.87[EUR][1000 genomes]
rs2470607	0.88[EUR][1000 genomes]
rs2470608	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2470610	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2470611	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2470612	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2470615	0.91[ASN][1000 genomes]
rs2470616	0.96[EUR][1000 genomes]
rs2470618	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2554314	0.83[EUR][1000 genomes]
rs2554322	0.91[EUR][1000 genomes]
rs2554327	0.88[EUR][1000 genomes]
rs2554328	0.88[EUR][1000 genomes]
rs2554337	0.90[EUR][1000 genomes]
rs2554342	0.94[EUR][1000 genomes]
rs2554349	0.93[EUR][1000 genomes]
rs2554350	0.93[EUR][1000 genomes]
rs2554353	0.88[EUR][1000 genomes]
rs2570238	0.87[EUR][1000 genomes]
rs2570239	0.87[EUR][1000 genomes]
rs2570240	0.85[EUR][1000 genomes]
rs2570241	0.85[EUR][1000 genomes]
rs2570248	0.88[EUR][1000 genomes]
rs2570263	0.91[EUR][1000 genomes]
rs2570268	0.94[EUR][1000 genomes]
rs2570269	0.95[EUR][1000 genomes]
rs2570271	0.95[EUR][1000 genomes]
rs2570275	0.95[EUR][1000 genomes]
rs2593168	0.93[EUR][1000 genomes]
rs2593170	0.92[EUR][1000 genomes]
rs2593173	0.93[EUR][1000 genomes]
rs2593177	0.90[EUR][1000 genomes]
rs2593179	0.93[EUR][1000 genomes]
rs2593182	0.93[EUR][1000 genomes]
rs2593183	0.93[EUR][1000 genomes]
rs2593185	0.95[EUR][1000 genomes]
rs2593187	0.95[EUR][1000 genomes]
rs2593188	0.95[EUR][1000 genomes]
rs2593194	0.90[EUR][1000 genomes]
rs2593198	0.95[EUR][1000 genomes]
rs2593199	0.95[EUR][1000 genomes]
rs2593202	0.95[EUR][1000 genomes]
rs2593204	0.89[EUR][1000 genomes]
rs2623243	0.95[EUR][1000 genomes]
rs2623244	0.95[EUR][1000 genomes]
rs2623255	0.93[EUR][1000 genomes]
rs2623266	0.93[EUR][1000 genomes]
rs2623271	0.88[EUR][1000 genomes]
rs2623279	0.93[EUR][1000 genomes]
rs2623281	0.91[EUR][1000 genomes]
rs2623282	0.93[EUR][1000 genomes]
rs2623283	0.93[EUR][1000 genomes]
rs2623284	0.93[EUR][1000 genomes]
rs2623285	0.93[EUR][1000 genomes]
rs2623286	0.93[EUR][1000 genomes]
rs2623288	0.94[EUR][1000 genomes]
rs2623289	0.93[EUR][1000 genomes]
rs2912186	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2912187	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2912188	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2912189	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2912190	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2916169	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2916170	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2916171	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2916172	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2916175	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2916176	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2916177	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2921951	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2921953	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2921957	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2929422	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929423	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2929424	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2929425	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2929426	0.95[EUR][1000 genomes]
rs2929428	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2959285	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2959289	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2959291	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2959292	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2959293	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2959295	0.88[ASN][1000 genomes]
rs2959298	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2959299	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2959300	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2959302	0.96[EUR][1000 genomes]
rs2959304	0.85[EUR][1000 genomes]
rs2959305	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2959306	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2959307	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3110551	0.91[EUR][1000 genomes]
rs3110553	0.89[EUR][1000 genomes]
rs34504520	0.82[EUR][1000 genomes]
rs34842090	0.90[EUR][1000 genomes]
rs35270232	0.85[EUR][1000 genomes]
rs35823585	0.84[EUR][1000 genomes]
rs36087956	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3794532	0.82[EUR][1000 genomes]
rs56148956	0.82[EUR][1000 genomes]
rs56185947	0.82[EUR][1000 genomes]
rs62016192	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6493520	0.84[EUR][1000 genomes]
rs6493521	0.82[EUR][1000 genomes]
rs6493525	0.86[EUR][1000 genomes]
rs6493526	0.87[EUR][1000 genomes]
rs7162554	0.95[EUR][1000 genomes]
rs7162925	0.89[EUR][1000 genomes]
rs7163541	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7164961	0.82[EUR][1000 genomes]
rs7170091	0.82[EUR][1000 genomes]
rs7170910	0.88[EUR][1000 genomes]
rs7171516	0.82[EUR][1000 genomes]
rs7171796	0.85[EUR][1000 genomes]
rs7178561	0.83[EUR][1000 genomes]
rs7178776	0.85[EUR][1000 genomes]
rs7178940	0.84[EUR][1000 genomes]
rs7179599	0.82[EUR][1000 genomes]
rs726158	0.82[EUR][1000 genomes]
rs72732914	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8024585	0.83[EUR][1000 genomes]
rs8026521	0.84[EUR][1000 genomes]
rs8028486	0.85[EUR][1000 genomes]
rs8028922	0.82[EUR][1000 genomes]
rs8029036	0.94[EUR][1000 genomes]
rs8033433	0.87[EUR][1000 genomes]
rs8035126	0.85[EUR][1000 genomes]
rs8038344	0.88[EUR][1000 genomes]
rs8040991	0.88[EUR][1000 genomes]
rs990665	0.93[EUR][1000 genomes]
rs9944235	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1053788	chr15:52223389-52307138	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1047260	chr15:52257100-52337418	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
5	nsv569410	chr15:52257874-52273132	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52262200-52264600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:52262200-52264800	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr15:52262200-52265000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:52262400-52264600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:52262400-52264600	Active TSS	Colonic Mucosa	Colon
6	chr15:52262400-52264800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:52262400-52265000	Active TSS	HSMM	muscle
8	chr15:52262600-52264600	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr15:52262600-52264600	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr15:52262600-52264600	Active TSS	GM12878-XiMat	blood
11	chr15:52262600-52264800	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr15:52262600-52264800	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr15:52262600-52264800	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr15:52262600-52264800	Active TSS	HMEC	breast
15	chr15:52262600-52264800	Active TSS	K562	blood
16	chr15:52262800-52264600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:52262800-52264600	Active TSS	H9 Cell Line	embryonic stem cell
18	chr15:52262800-52264600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:52262800-52264800	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr15:52262800-52264800	Active TSS	H1 Cell Line	embryonic stem cell
21	chr15:52262800-52264800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:52262800-52264800	Active TSS	HSMMtube	muscle
23	chr15:52263000-52264400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr15:52263000-52264600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:52263000-52264600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:52263000-52264600	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr15:52263000-52264600	Active TSS	Psoas Muscle	Psoas
28	chr15:52263000-52264600	Active TSS	Right Ventricle	heart
29	chr15:52263000-52264600	Active TSS	NHDF-Ad	bronchial
30	chr15:52263000-52264800	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr15:52263000-52264800	Active TSS	Fetal Kidney	kidney
32	chr15:52263000-52264800	Active TSS	Fetal Muscle Trunk	muscle
33	chr15:52263000-52264800	Active TSS	A549	lung
34	chr15:52263200-52264400	Active TSS	Fetal Brain Male	brain
35	chr15:52263200-52264400	Active TSS	Gastric	stomach
36	chr15:52263200-52264400	Active TSS	Lung	lung
37	chr15:52263200-52264600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:52263200-52264600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:52263200-52264600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:52263200-52264600	Active TSS	Muscle Satellite Cultured Cells	--
41	chr15:52263200-52264600	Active TSS	Brain Cingulate Gyrus	brain
42	chr15:52263200-52264600	Active TSS	Esophagus	oesophagus
43	chr15:52263200-52264600	Active TSS	Fetal Stomach	stomach
44	chr15:52263200-52264600	Active TSS	Left Ventricle	heart
45	chr15:52263200-52264600	Active TSS	Ovary	ovary
46	chr15:52263200-52264600	Active TSS	Stomach Mucosa	stomach
47	chr15:52263200-52264600	Active TSS	Dnd41	blood
48	chr15:52263200-52264800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:52263200-52264800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:52263200-52264800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links