Variant report

Variant	rs3811696
Chromosome Location	chr3:49761605-49761606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:364)
CpG islands
(count:61)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:364 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr3:49761148-49761881	A549	lung:	n/a	n/a
2	RUNX3	chr3:49760664-49762308	GM12878	blood:	n/a	n/a
3	SPI1	chr3:49761347-49761771	GM12891	blood:	n/a	n/a
4	TCF12	chr3:49760561-49762054	A549	lung:	n/a	chr3:49761556-49761563
5	POLR2A	chr3:49757537-49762490	GM12878	blood:	n/a	n/a
6	POLR2A	chr3:49758190-49762295	A549	lung:	n/a	n/a
7	BCL3	chr3:49761022-49761872	GM12878	blood:	n/a	n/a
8	BRCA1	chr3:49761297-49761626	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr3:49754469-49762505	GM12892	blood:	n/a	n/a
10	PAX5	chr3:49761171-49761815	GM12878	blood:	n/a	n/a
11	BCLAF1	chr3:49761142-49761858	GM12878	blood:	n/a	n/a
12	FOS	chr3:49761282-49761706	K562	blood:	n/a	chr3:49761497-49761506
13	JUND	chr3:49761202-49761735	H1-hESC	embryonic stem cell:	n/a	chr3:49761497-49761506
14	SIN3AK20	chr3:49761207-49761787	HepG2	liver:	n/a	n/a
15	POLR2A	chr3:49760653-49761970	MCF-7	breast:	n/a	n/a
16	CEBPB	chr3:49761333-49761612	Hela-S3	cervix:	n/a	chr3:49761496-49761504
17	POLR2A	chr3:49760706-49762065	K562	blood:	n/a	n/a
18	MAX	chr3:49761168-49761995	A549	lung:	n/a	chr3:49761526-49761535
19	NFIC	chr3:49761048-49761799	ECC-1	luminal epithelium:	n/a	n/a
20	SIN3AK20	chr3:49760799-49761750	PANC-1	pancreas:	n/a	n/a
21	ZC3H11A	chr3:49761259-49761878	K562	blood:	n/a	n/a
22	ATF3	chr3:49761172-49761682	K562	blood:	n/a	chr3:49761395-49761415 chr3:49761406-49761426 chr3:49761395-49761404
23	TAF1	chr3:49760947-49762170	ECC-1	luminal epithelium:	n/a	n/a
24	UBTF	chr3:49761356-49762015	K562	blood:	n/a	n/a
25	USF1	chr3:49761405-49761666	HepG2	liver:	n/a	n/a
26	POLR2A	chr3:49757841-49761975	PBDE	blood:	n/a	n/a
27	POLR2A	chr3:49755286-49762590	SK-N-MC	brain:	n/a	n/a
28	CREB1	chr3:49760695-49762232	GM12878	blood:	n/a	n/a
29	MAZ	chr3:49760956-49762033	GM12878	blood:	n/a	chr3:49761526-49761535
30	NFATC1	chr3:49760461-49762341	GM12878	blood:	n/a	n/a
31	POU2F2	chr3:49761587-49761783	GM12878	blood:	n/a	n/a
32	POLR2A	chr3:49757873-49762519	HepG2	liver:	n/a	n/a
33	YY1	chr3:49760716-49761838	HepG2	liver:	n/a	chr3:49761390-49761404
34	CREB1	chr3:49761107-49761717	ECC-1	luminal epithelium:	n/a	n/a
35	ELF1	chr3:49761160-49761810	K562	blood:	n/a	n/a
36	POLR2A	chr3:49754970-49763587	HepG2	liver:	n/a	n/a
37	CTCF	chr3:49761561-49761683	Spleen_OC	spleen:	n/a	n/a
38	SIN3AK20	chr3:49761413-49761672	PFSK-1	brain:	n/a	n/a
39	MAX	chr3:49761220-49761949	MCF-7	breast:	n/a	chr3:49761526-49761535
40	POLR2A	chr3:49760361-49762000	PFSK-1	brain:	n/a	n/a
41	EGR1	chr3:49760731-49761682	GM12878	blood:	n/a	n/a
42	FOXM1	chr3:49761116-49761788	GM12878	blood:	n/a	n/a
43	CCNT2	chr3:49761175-49761993	K562	blood:	n/a	n/a
44	POLR2A	chr3:49760493-49761900	MCF10A-Er-Src	breast:	n/a	n/a
45	PML	chr3:49760424-49762274	GM12878	blood:	n/a	n/a
46	POLR2A	chr3:49760692-49762051	U87	brain:	n/a	n/a
47	POLR2A	chr3:49759778-49761896	MCF10A-Er-Src	breast:	n/a	n/a
48	POU2F2	chr3:49761206-49761798	GM12878	blood:	n/a	n/a
49	RFX5	chr3:49761415-49761770	H1-hESC	embryonic stem cell:	n/a	chr3:49761521-49761536 chr3:49761423-49761432 chr3:49761496-49761505
50	STAT1	chr3:49761255-49761613	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:49761600-49761650	AG04449	skin:	fetal
2	chr3:49761600-49761650	Hela-S3	cervix:	n/a
3	chr3:49761600-49761650	HAEpiC	amniotic membrane:	n/a
4	chr3:49761600-49761650	U87	brain:	n/a
5	chr3:49761600-49761650	NHBE	bronchial:	n/a
6	chr3:49761600-49761650	Jurkat	blood:	n/a
7	chr3:49761600-49761650	ovcar-3	ovarian:	n/a
8	chr3:49761600-49761650	HCT-116	colon:	n/a
9	chr3:49761600-49761650	NHDF-neo	bronchial:	n/a
10	chr3:49761600-49761650	HMEC	breast:	n/a
11	chr3:49761600-49761650	PFSK-1	brain:	n/a
12	chr3:49761600-49761650	HPAEpiC	pulmonary alveolar:	n/a
13	chr3:49761600-49761650	AG09309	skin:	n/a
14	chr3:49761600-49761650	LNCaP	prostate:	n/a
15	chr3:49761600-49761650	AoSMC	blood vessel:	n/a
16	chr3:49761600-49761650	HCPEpiC	choroid plexus:	n/a
17	chr3:49761600-49761650	T-47D	breast:	n/a
18	chr3:49761600-49761650	Caco-2	colon:	n/a
19	chr3:49761600-49761650	AG04450	lung:	fetal
20	chr3:49761600-49761650	HEEpiC	esophagus:	n/a
21	chr3:49761600-49761650	SAEC	small airway:	n/a
22	chr3:49761600-49761650	HIPEpiC	eye:	n/a
23	chr3:49761600-49761650	HRCEpiC	kidney:	n/a
24	chr3:49761600-49761650	RPTEC	kidney:	n/a
25	chr3:49761600-49761650	ECC-1	luminal epithelium:	n/a
26	chr3:49761600-49761650	MCF10A-Er-Src	breast:	n/a
27	chr3:49761600-49761650	BJ	skin:	n/a
28	chr3:49761600-49761650	GM12878	blood:	n/a
29	chr3:49761600-49761650	HRE	kidney:	n/a
30	chr3:49761600-49761650	HNPCEpiC	eye:	n/a
31	chr3:49761600-49761650	A549	lung:	n/a
32	chr3:49761600-49761650	K562	blood:	n/a
33	chr3:49761600-49761650	SKMC	muscle:	n/a
34	chr3:49761600-49761650	HepG2	liver:	n/a
35	chr3:49761600-49761650	SK-N-SH_RA	brain:	n/a
36	chr3:49761600-49761650	HCM	heart:	n/a
37	chr3:49761600-49761650	PrEC	prostate:	n/a
38	chr3:49761600-49761650	HUVEC	blood vessel:	n/a
39	chr3:49761600-49761650	HL-60	blood:	n/a
40	chr3:49761600-49761650	BE2_C	brain:	n/a
41	chr3:49761600-49761650	HRPEpiC	eye:	n/a
42	chr3:49761600-49761650	AG10803	skin:	n/a
43	chr3:49761600-49761650	H1-hESC	embryonic stem cell:	embryo
44	chr3:49761600-49761650	SK-N-MC	brain:	n/a
45	chr3:49761600-49761650	NT2-D1	testis:	n/a
46	chr3:49761600-49761650	HEK293	kidney:	embryo
47	chr3:49761600-49761650	PANC-1	pancreas:	n/a
48	chr3:49761600-49761650	NB4	blood:	n/a
49	chr3:49761600-49761650	SK-N-SH	brain:	n/a
50	chr3:49761600-49761650	GM12892	blood:	n/a

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:244998074..244998716-chr3:49761202..49761902,2	Hela-S3	cervix:
2	chr3:49724901..49726999-chr3:49761086..49763587,3	MCF-7	breast:
3	chr3:49715479..49718306-chr3:49759884..49762675,3	K562	blood:
4	chr3:49711183..49713399-chr3:49759820..49761645,3	K562	blood:
5	chr3:49761055..49763701-chr3:49764283..49769369,4	MCF-7	breast:
6	chr3:49710197..49713072-chr3:49759630..49762760,3	MCF-7	breast:
7	chr3:49759227..49762200-chr3:49837244..49838747,2	MCF-7	breast:
8	chr3:49760500..49762249-chr3:49875481..49878236,2	MCF-7	breast:
9	chr3:49760150..49762136-chr6:26123661..26125632,2	K562	blood:
10	chr3:49759986..49763114-chr3:49822374..49825754,4	MCF-7	breast:
11	chr3:49711233..49713399-chr3:49759820..49762894,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNF123-1	chr3:49760258-49762050	NONHSAT089734

No data

Variant related genes	Relation type
AMIGO3	TF binding region
GMPPB	TF binding region
AMIGO3	CpG island
GMPPB	CpG island
ENSG00000173531	Chromatin interaction
ENSG00000183763	Chromatin interaction
ENSG00000176095	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000187492	Chromatin interaction
ENSG00000164062	Chromatin interaction
ENSG00000164068	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000203667	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10049413	0.86[ASN][1000 genomes]
rs1049256	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10865958	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10865959	0.86[ASN][1000 genomes]
rs11130214	0.94[ASN][1000 genomes]
rs11130216	0.94[ASN][1000 genomes]
rs11130218	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11130219	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11130221	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1128535	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11709680	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11710675	0.96[ASN][1000 genomes]
rs11714957	0.94[ASN][1000 genomes]
rs11715304	0.88[ASN][1000 genomes]
rs11716575	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11717256	0.89[ASN][1000 genomes]
rs11717463	0.94[ASN][1000 genomes]
rs11920900	0.93[ASN][1000 genomes]
rs12381242	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12490656	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12496226	0.89[ASN][1000 genomes]
rs13063621	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13084243	0.94[ASN][1000 genomes]
rs13085679	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13086130	0.94[ASN][1000 genomes]
rs13086465	0.92[ASN][1000 genomes]
rs13090611	0.86[ASN][1000 genomes]
rs1317140	0.80[ASN][1000 genomes]
rs13316065	0.85[ASN][1000 genomes]
rs1491986	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1799843	0.87[ASN][1000 genomes]
rs1799845	0.87[ASN][1000 genomes]
rs2234385	0.87[ASN][1000 genomes]
rs2234391	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2246832	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2247036	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2271960	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2271961	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2276864	0.86[ASN][1000 genomes]
rs2291542	0.96[ASN][1000 genomes]
rs2307021	0.96[ASN][1000 genomes]
rs2352967	0.85[ASN][1000 genomes]
rs2352974	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2352975	0.86[ASN][1000 genomes]
rs34451146	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34522271	0.94[ASN][1000 genomes]
rs34614773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34735338	0.92[ASN][1000 genomes]
rs35210174	0.94[ASN][1000 genomes]
rs35261599	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35474403	0.94[ASN][1000 genomes]
rs3749237	0.94[ASN][1000 genomes]
rs3749240	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3749241	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3811695	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3819325	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4519692	0.80[ASN][1000 genomes]
rs4768	0.96[ASN][1000 genomes]
rs4855841	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4855850	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4855862	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4855867	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57648519	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59906301	0.89[ASN][1000 genomes]
rs60205400	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62260715	0.92[ASN][1000 genomes]
rs62260719	0.87[ASN][1000 genomes]
rs62260729	0.86[ASN][1000 genomes]
rs6446295	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6766836	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6775384	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6785549	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6802890	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6804655	0.94[ASN][1000 genomes]
rs695238	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7372725	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7372730	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7372966	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7374183	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7374277	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7426497	0.88[AMR][1000 genomes]
rs7429353	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7431078	0.94[ASN][1000 genomes]
rs7431106	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7618501	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7618519	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7629936	0.86[ASN][1000 genomes]
rs7634886	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7634902	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7645061	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7648987	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7649348	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9814765	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9815766	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9819511	0.84[ASN][1000 genomes]
rs9850465	0.84[ASN][1000 genomes]
rs9853458	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9855505	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9859153	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9865480	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9871654	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9872864	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9873183	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9876508	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9882639	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv1825898	chr3:49688948-49764849	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs3811696	RBM6	Cis_1M	lymphoblastoid	RTeQTL
rs3811696	UBA7	cis	Whole Blood	GTEx
rs3811696	RBM6	cis	Thyroid	GTEx
rs3811696	RBM6	cis	Adipose Subcutaneous	GTEx
rs3811696	RBM6	cis	Whole Blood	GTEx
rs3811696	RBM6	cis	Esophagus Muscularis	GTEx
rs3811696	RBM6	cis	lung	GTEx
rs3811696	FAM212A	cis	Esophagus Mucosa	GTEx
rs3811696	RBM6	cis	Artery Tibial	GTEx
rs3811696	RBM6	cis	Nerve Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49758000-49763600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:49760000-49761800	Active TSS	A549	lung
3	chr3:49760200-49762000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr3:49760200-49762400	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr3:49760400-49761800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:49760400-49761800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:49760400-49762000	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr3:49760400-49762200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr3:49760400-49762600	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr3:49760600-49761800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:49760600-49761800	Active TSS	Sigmoid Colon	Sigmoid Colon
12	chr3:49760600-49761800	Active TSS	NHDF-Ad	bronchial
13	chr3:49760600-49761800	Active TSS	NHLF	lung
14	chr3:49760600-49762000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:49760600-49762000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:49760600-49762000	Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr3:49760600-49762000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:49760600-49762000	Active TSS	Aorta	Aorta
19	chr3:49760600-49762000	Active TSS	Gastric	stomach
20	chr3:49760600-49762000	Active TSS	Lung	lung
21	chr3:49760600-49762000	Active TSS	Small Intestine	intestine
22	chr3:49760600-49762200	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr3:49760600-49762200	Active TSS	Fetal Kidney	kidney
24	chr3:49760600-49762200	Active TSS	HSMMtube	muscle
25	chr3:49760600-49762600	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr3:49760800-49761800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:49760800-49761800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:49760800-49761800	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr3:49760800-49761800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:49760800-49761800	Active TSS	Primary T cells from cord blood	blood
31	chr3:49760800-49761800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:49760800-49761800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr3:49760800-49761800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:49760800-49761800	Active TSS	Duodenum Mucosa	Duodenum
35	chr3:49760800-49761800	Active TSS	Fetal Intestine Large	intestine
36	chr3:49760800-49761800	Active TSS	Fetal Intestine Small	intestine
37	chr3:49760800-49761800	Active TSS	Placenta Amnion	Placenta Amnion
38	chr3:49760800-49761800	Active TSS	Rectal Mucosa Donor 31	rectum
39	chr3:49760800-49761800	Active TSS	Rectal Smooth Muscle	rectum
40	chr3:49760800-49761800	Active TSS	Stomach Mucosa	stomach
41	chr3:49760800-49761800	Active TSS	Thymus	Thymus
42	chr3:49760800-49761800	Active TSS	Hela-S3	cervix
43	chr3:49760800-49761800	Active TSS	HUVEC	blood vessel
44	chr3:49760800-49761800	Active TSS	K562	blood
45	chr3:49760800-49761800	Active TSS	NH-A	brain
46	chr3:49760800-49761800	Active TSS	NHEK	skin
47	chr3:49760800-49761800	Active TSS	Osteobl	bone
48	chr3:49760800-49762000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr3:49760800-49762000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:49760800-49762000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links