Variant report

Variant	rs7634902
Chromosome Location	chr3:49762662-49762663
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:49754970-49763587	HepG2	liver:	n/a	n/a
2	POLR2A	chr3:49757760-49765712	HepG2	liver:	n/a	n/a
3	POLR2A	chr3:49760607-49762847	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr3:49762529-49762663	K562	blood:	n/a	n/a
5	POLR2A	chr3:49762181-49762731	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr3:49757676-49762669	K562	blood:	n/a	n/a
7	POLR2A	chr3:49762020-49762754	ECC-1	luminal epithelium:	n/a	n/a
8	POLR2A	chr3:49752889-49762689	GM12892	blood:	n/a	n/a
9	POLR2A	chr3:49757849-49763169	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr3:49762595-49762758	HUVEC	blood vessel:	n/a	n/a
11	POLR2A	chr3:49753024-49764559	K562	blood:	n/a	n/a
12	POLR2A	chr3:49757597-49762720	GM12878	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:49724901..49726999-chr3:49761086..49763587,3	MCF-7	breast:
2	chr3:49715479..49718306-chr3:49759884..49762675,3	K562	blood:
3	chr3:49762481..49764541-chr3:49791182..49793347,2	K562	blood:
4	chr3:49761055..49763701-chr3:49764283..49769369,4	MCF-7	breast:
5	chr3:49710197..49713072-chr3:49759630..49762760,3	MCF-7	breast:
6	chr3:49710816..49712804-chr3:49762620..49764673,2	K562	blood:
7	chr3:49759986..49763114-chr3:49822374..49825754,4	MCF-7	breast:
8	chr3:49711233..49713399-chr3:49759820..49762894,3	K562	blood:

No data

Variant related genes	Relation type
AMIGO3	TF binding region
GMPPB	TF binding region
ENSG00000164068	Chromatin interaction
ENSG00000164062	Chromatin interaction
ENSG00000173531	Chromatin interaction
ENSG00000176095	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10049413	0.86[ASN][1000 genomes]
rs1049256	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865958	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10865959	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs11130214	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs11130216	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs11130218	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130219	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130221	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1128535	1.00[CEU][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11709680	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11710675	0.99[ASN][1000 genomes]
rs11714957	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11715304	0.88[ASN][1000 genomes]
rs11716575	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11717256	0.87[ASN][1000 genomes]
rs11717463	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11920900	0.95[ASN][1000 genomes]
rs12381242	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12490656	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12496226	0.92[ASN][1000 genomes]
rs13063621	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13084243	0.96[ASN][1000 genomes]
rs13085679	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13086130	0.96[ASN][1000 genomes]
rs13086465	0.94[ASN][1000 genomes]
rs13090611	0.88[ASN][1000 genomes]
rs1317140	0.90[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs13316065	0.80[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1491986	0.94[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1799843	0.90[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs1799845	0.90[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs2234385	0.89[ASN][1000 genomes]
rs2234391	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2246832	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247036	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2271960	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.85[LWK][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2271961	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2276864	0.88[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2291542	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2307021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2352967	0.85[ASN][1000 genomes]
rs2352974	1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2352975	0.90[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs2681780	0.81[CEU][hapmap]
rs2681781	0.81[CEU][hapmap]
rs2777888	0.80[CEU][hapmap]
rs34451146	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34522271	0.96[ASN][1000 genomes]
rs34614773	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34735338	0.94[ASN][1000 genomes]
rs35210174	1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs35261599	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35474403	0.96[ASN][1000 genomes]
rs3749237	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3749240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3749241	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3811695	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3811696	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3819325	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4519692	0.80[ASN][1000 genomes]
rs4768	1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4855841	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4855850	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4855862	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4855867	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57648519	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59906301	0.92[ASN][1000 genomes]
rs60205400	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62260715	0.94[ASN][1000 genomes]
rs62260719	0.89[ASN][1000 genomes]
rs62260729	0.86[ASN][1000 genomes]
rs6446295	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6766836	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6775384	1.00[CEU][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6785549	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6802890	1.00[CEU][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6804655	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs695238	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71324996	0.80[ASN][1000 genomes]
rs7372725	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7372730	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7372966	0.83[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7374183	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7374277	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7426497	0.88[AMR][1000 genomes]
rs7429353	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7431078	0.96[ASN][1000 genomes]
rs7431106	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7618501	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7618519	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7629936	0.90[CHB][hapmap];0.96[CHD][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7634886	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7645061	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.89[LWK][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7648987	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.82[LWK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7649348	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9814765	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815766	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9819511	0.84[ASN][1000 genomes]
rs9821675	0.84[CEU][hapmap]
rs9850465	0.86[ASN][1000 genomes]
rs9853458	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9855505	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9859153	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9865480	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9871654	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9872864	1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9873183	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9876508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9882639	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv1825898	chr3:49688948-49764849	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs7634902	RBM6	cis	lung	GTEx
rs7634902	RBM6	cis	Artery Tibial	GTEx
rs7634902	MYL3	cis	parietal	SCAN
rs7634902	FAM212A	cis	Esophagus Mucosa	GTEx
rs7634902	RNF123	cis	cerebellum	SCAN
rs7634902	ZNF589	cis	parietal	SCAN
rs7634902	RBM6	cis	parietal	SCAN
rs7634902	RBM6	cis	Esophagus Muscularis	GTEx
rs7634902	UBA7	cis	Whole Blood	GTEx
rs7634902	C3orf54	cis	cerebellum	SCAN
rs7634902	RBM6	cis	cerebellum	SCAN
rs7634902	RBM6	cis	Nerve Tibial	GTEx
rs7634902	RBM6	cis	Adipose Subcutaneous	GTEx
rs7634902	RNF123	cis	parietal	SCAN
rs7634902	RBM6	Cis_1M	lymphoblastoid	RTeQTL
rs7634902	RBM6	cis	Whole Blood	GTEx
rs7634902	RBM6	cis	Thyroid	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49758000-49763600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:49761800-49762800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr3:49762000-49762800	Enhancers	Pancreas	Pancrea
4	chr3:49762000-49762800	Flanking Active TSS	HepG2	liver
5	chr3:49762000-49763200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:49762000-49763600	Weak transcription	Aorta	Aorta
7	chr3:49762000-49770000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:49762000-49773800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr3:49762000-49775000	Weak transcription	Psoas Muscle	Psoas
10	chr3:49762000-49778000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:49762200-49762800	Enhancers	Primary B cells from cord blood	blood
12	chr3:49762200-49762800	Enhancers	Primary B cells from peripheral blood	blood
13	chr3:49762200-49762800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:49762200-49762800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:49762200-49762800	Weak transcription	Brain Substantia Nigra	brain
16	chr3:49762200-49762800	Genic enhancers	Fetal Intestine Large	intestine
17	chr3:49762200-49762800	Genic enhancers	Fetal Intestine Small	intestine
18	chr3:49762200-49762800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:49762200-49762800	Genic enhancers	Stomach Smooth Muscle	stomach
20	chr3:49762200-49763000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:49762200-49763000	Genic enhancers	Placenta	Placenta
22	chr3:49762200-49763200	Genic enhancers	Brain Cingulate Gyrus	brain
23	chr3:49762200-49763400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:49762200-49764000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:49762200-49764200	Weak transcription	Primary T cells from cord blood	blood
26	chr3:49762200-49764400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:49762200-49764400	Weak transcription	NH-A	brain
28	chr3:49762200-49764800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr3:49762200-49764800	Genic enhancers	Fetal Muscle Trunk	muscle
30	chr3:49762200-49765200	Weak transcription	Fetal Kidney	kidney
31	chr3:49762200-49765800	Enhancers	Stomach Mucosa	stomach
32	chr3:49762200-49765800	Strong transcription	NHLF	lung
33	chr3:49762200-49768800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr3:49762200-49769000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr3:49762400-49762800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:49762400-49762800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr3:49762400-49762800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:49762400-49762800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr3:49762400-49762800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr3:49762400-49762800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:49762400-49762800	Weak transcription	Brain Anterior Caudate	brain
42	chr3:49762400-49762800	Weak transcription	Colon Smooth Muscle	Colon
43	chr3:49762400-49762800	Enhancers	GM12878-XiMat	blood
44	chr3:49762400-49762800	Weak transcription	NHEK	skin
45	chr3:49762400-49763000	Genic enhancers	Liver	Liver
46	chr3:49762400-49763000	Weak transcription	Left Ventricle	heart
47	chr3:49762400-49763000	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr3:49762400-49763200	Weak transcription	Ovary	ovary
49	chr3:49762400-49763200	Enhancers	Hela-S3	cervix
50	chr3:49762400-49763200	Genic enhancers	K562	blood

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