Variant report

Variant	rs11709680
Chromosome Location	chr3:49745188-49745189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:49745133-49745823	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:49744504..49746005-chr3:49749616..49751873,2	K562	blood:
2	chr3:49741563..49745269-chr3:49756251..49759503,3	K562	blood:
3	chr3:49743020..49745371-chr3:49755565..49758428,3	K562	blood:
4	chr3:49744683..49746856-chr3:49748059..49750371,2	MCF-7	breast:

Variant related genes	Relation type
RNF123	TF binding region
ENSG00000164068	Chromatin interaction
ENSG00000176020	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10049413	0.84[ASN][1000 genomes]
rs1049256	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1062633	0.81[CHB][hapmap]
rs10865958	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10865959	0.84[ASN][1000 genomes]
rs11130214	0.82[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs11130216	0.82[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs11130218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130219	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1128535	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11710675	0.96[ASN][1000 genomes]
rs11714957	0.82[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11715304	0.88[ASN][1000 genomes]
rs11716575	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717256	0.89[ASN][1000 genomes]
rs11717463	0.82[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11920900	0.93[ASN][1000 genomes]
rs12381242	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490656	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12496226	0.89[ASN][1000 genomes]
rs13063621	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13084243	0.94[ASN][1000 genomes]
rs13085679	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13086130	0.94[ASN][1000 genomes]
rs13086465	0.92[ASN][1000 genomes]
rs13090611	0.86[ASN][1000 genomes]
rs1317140	0.96[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs13316065	0.82[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1491986	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1799843	0.96[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1799845	0.96[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2234385	0.87[ASN][1000 genomes]
rs2234391	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2246832	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247036	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2271960	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2271961	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2276864	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs2291542	0.82[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2307021	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2352967	0.85[ASN][1000 genomes]
rs2352974	0.84[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2352975	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2681780	0.81[CEU][hapmap]
rs2681781	0.81[CEU][hapmap]
rs2777888	0.80[CEU][hapmap]
rs34451146	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34522271	0.94[ASN][1000 genomes]
rs34614773	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34735338	0.92[ASN][1000 genomes]
rs35210174	0.82[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs35261599	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35474403	0.94[ASN][1000 genomes]
rs3749237	0.82[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3749240	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3749241	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3811695	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3811696	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3819325	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4519692	0.80[ASN][1000 genomes]
rs4768	0.82[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4855841	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4855850	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4855862	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4855867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57648519	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59906301	0.89[ASN][1000 genomes]
rs60205400	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62260715	0.92[ASN][1000 genomes]
rs62260719	0.87[ASN][1000 genomes]
rs62260729	0.84[ASN][1000 genomes]
rs6446295	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6766836	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6775384	0.84[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6785549	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6802890	0.84[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6804655	0.82[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs695238	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7372725	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7372730	1.00[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7372966	0.89[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.94[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7374183	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7374277	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7426497	0.87[AMR][1000 genomes]
rs7429353	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7431078	0.94[ASN][1000 genomes]
rs7431106	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7618501	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7618519	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7629936	0.96[CHD][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs7634886	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7634902	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7645061	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7648987	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7649348	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9814765	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9819511	0.84[ASN][1000 genomes]
rs9821675	0.84[CEU][hapmap]
rs9850465	0.84[ASN][1000 genomes]
rs9853458	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9855505	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9859153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9865480	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9871654	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9872864	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9873183	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9876508	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9882639	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv1825898	chr3:49688948-49764849	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	esv1796605	chr3:49744556-49760567	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs11709680	RBM6	cis	Artery Tibial	GTEx
rs11709680	C3orf54	cis	cerebellum	SCAN
rs11709680	RBM6	cis	Thyroid	GTEx
rs11709680	MYL3	cis	parietal	SCAN
rs11709680	RBM6	cis	Esophagus Muscularis	GTEx
rs11709680	RBM6	Cis_1M	lymphoblastoid	RTeQTL
rs11709680	RBM6	cis	lung	GTEx
rs11709680	UBA7	cis	Whole Blood	GTEx
rs11709680	RBM6	cis	parietal	SCAN
rs11709680	RNF123	cis	cerebellum	SCAN
rs11709680	ZNF589	cis	parietal	SCAN
rs11709680	RNF123	cis	parietal	SCAN
rs11709680	FAM212A	cis	Esophagus Mucosa	GTEx
rs11709680	RBM6	cis	Nerve Tibial	GTEx
rs11709680	RBM6	cis	cerebellum	SCAN
rs11709680	RBM6	cis	Adipose Subcutaneous	GTEx
rs11709680	RBM6	cis	Whole Blood	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49728000-49748800	Weak transcription	A549	lung
2	chr3:49728400-49753200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:49728400-49756600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:49728600-49750400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr3:49729200-49749800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr3:49729200-49750200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:49729200-49755800	Weak transcription	Right Atrium	heart
8	chr3:49729400-49750200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:49732200-49755000	Strong transcription	Fetal Intestine Small	intestine
10	chr3:49733000-49750200	Weak transcription	Psoas Muscle	Psoas
11	chr3:49734200-49746000	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:49734200-49746000	Strong transcription	Thymus	Thymus
13	chr3:49734200-49746200	Strong transcription	Duodenum Mucosa	Duodenum
14	chr3:49734400-49745200	Strong transcription	Fetal Brain Female	brain
15	chr3:49734400-49745400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr3:49734400-49745400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:49734400-49746000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:49734400-49746000	Strong transcription	Fetal Intestine Large	intestine
19	chr3:49734400-49746200	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr3:49734400-49746200	Strong transcription	Stomach Smooth Muscle	stomach
21	chr3:49734400-49746200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr3:49734400-49746400	Strong transcription	Brain Hippocampus Middle	brain
23	chr3:49734400-49756000	Strong transcription	Liver	Liver
24	chr3:49734600-49745400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:49734600-49745400	Strong transcription	Brain Germinal Matrix	brain
26	chr3:49734600-49746000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:49734600-49746200	Strong transcription	Fetal Muscle Leg	muscle
28	chr3:49734600-49746400	Strong transcription	Fetal Thymus	thymus
29	chr3:49734800-49745400	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:49734800-49746200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:49734800-49746200	Strong transcription	Brain Anterior Caudate	brain
32	chr3:49735400-49755400	Weak transcription	Stomach Mucosa	stomach
33	chr3:49736000-49749800	Weak transcription	GM12878-XiMat	blood
34	chr3:49736000-49753000	Weak transcription	K562	blood
35	chr3:49736600-49746000	Strong transcription	Right Ventricle	heart
36	chr3:49736800-49745200	Strong transcription	Placenta Amnion	Placenta Amnion
37	chr3:49736800-49756400	Weak transcription	HSMM	muscle
38	chr3:49737200-49746000	Strong transcription	Ovary	ovary
39	chr3:49737200-49746200	Strong transcription	Adipose Nuclei	Adipose
40	chr3:49738400-49745200	Strong transcription	Left Ventricle	heart
41	chr3:49738800-49745200	Strong transcription	Colonic Mucosa	Colon
42	chr3:49739000-49752000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr3:49739000-49756400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr3:49739200-49745200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:49739200-49753200	Weak transcription	Colon Smooth Muscle	Colon
46	chr3:49739400-49745200	Strong transcription	H9 Cell Line	embryonic stem cell
47	chr3:49739400-49746000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr3:49740000-49755600	Weak transcription	Fetal Brain Male	brain
49	chr3:49740200-49756000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:49740200-49756600	Weak transcription	HSMMtube	muscle

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