The 2.0 version of rSNPBase

Variant report

Variant rs9865480
Chromosome Location chr3:49799729-49799730
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49762600-49809000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr3:49775600-49817000 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr3:49775800-49810200 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr3:49775800-49823000 Weak transcription Placenta Amnion Placenta Amnion
5 chr3:49776200-49802000 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr3:49776400-49812000 Weak transcription HSMM muscle
7 chr3:49776400-49812200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr3:49776400-49812600 Weak transcription Gastric stomach
9 chr3:49776400-49818000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr3:49776400-49818000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr3:49776400-49818200 Weak transcription Fetal Kidney kidney
12 chr3:49776600-49812000 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr3:49782600-49814000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr3:49785200-49807200 Weak transcription Hela-S3 cervix
15 chr3:49785600-49822400 Weak transcription HSMMtube muscle
16 chr3:49785600-49822600 Weak transcription Esophagus oesophagus
17 chr3:49785800-49807400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr3:49785800-49811200 Weak transcription Muscle Satellite Cultured Cells --
19 chr3:49785800-49812400 Weak transcription Rectal Smooth Muscle rectum
20 chr3:49785800-49818000 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr3:49786000-49807200 Weak transcription Fetal Brain Female brain
22 chr3:49786000-49812400 Weak transcription NHEK skin
23 chr3:49786000-49812600 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr3:49786000-49812800 Weak transcription HUES48 Cell Line embryonic stem cell
25 chr3:49786000-49814400 Weak transcription Fetal Muscle Trunk muscle
26 chr3:49786000-49823000 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr3:49786200-49801800 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr3:49786200-49806800 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr3:49786200-49807400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr3:49786200-49812000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr3:49786200-49812600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr3:49786200-49812600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
33 chr3:49786200-49822400 Weak transcription HMEC breast
34 chr3:49786400-49817800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr3:49786600-49807400 Weak transcription Aorta Aorta
36 chr3:49786600-49812800 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr3:49786600-49817800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr3:49787600-49807000 Weak transcription Dnd41 blood
39 chr3:49787600-49808000 Weak transcription Brain Germinal Matrix brain
40 chr3:49787800-49807200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr3:49787800-49807200 Weak transcription Duodenum Mucosa Duodenum
42 chr3:49787800-49812600 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr3:49787800-49812600 Weak transcription Thymus Thymus
44 chr3:49788000-49807000 Weak transcription Primary T cells from cord blood blood
45 chr3:49788000-49807200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr3:49788400-49808600 Weak transcription GM12878-XiMat blood
47 chr3:49788600-49801400 Weak transcription Fetal Intestine Large intestine
48 chr3:49788800-49801800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr3:49789200-49803200 Weak transcription Primary T cells fromperipheralblood blood
50 chr3:49789600-49806200 Weak transcription Placenta Placenta

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Last update: Aug 31, 2015