The 2.0 version of rSNPBase

Variant report

Variant rs3850843
Chromosome Location chr1:150348335-150348336
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150338400-150405200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:150339400-150348800 Enhancers Primary T killer naive cells fromperipheralblood blood
3 chr1:150339400-150372800 Weak transcription Fetal Muscle Leg muscle
4 chr1:150339400-150390600 Weak transcription Fetal Muscle Trunk muscle
5 chr1:150339600-150349400 Weak transcription Fetal Stomach stomach
6 chr1:150339600-150356400 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr1:150339600-150359800 Weak transcription Monocytes-CD14+_RO01746 blood
8 chr1:150339600-150372800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr1:150339800-150368600 Weak transcription Primary hematopoietic stem cells blood
10 chr1:150339800-150390000 Weak transcription Thymus Thymus
11 chr1:150340000-150362000 Weak transcription Primary B cells from cord blood blood
12 chr1:150340000-150416800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr1:150340200-150348600 Enhancers Primary T helper cells fromperipheralblood blood
14 chr1:150340600-150366800 Weak transcription Fetal Brain Female brain
15 chr1:150341400-150348400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
16 chr1:150342600-150348600 Enhancers Primary T helper naive cells fromperipheralblood blood
17 chr1:150342600-150348600 Enhancers Primary T helper 17 cells PMA-I stimulated --
18 chr1:150342600-150349600 Enhancers Primary T helper naive cells from peripheral blood blood
19 chr1:150342800-150361600 Weak transcription Fetal Thymus thymus
20 chr1:150343400-150378000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr1:150343600-150349800 Enhancers Primary T helper cells PMA-I stimulated --
22 chr1:150343600-150361400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:150343800-150359400 Weak transcription Duodenum Mucosa Duodenum
24 chr1:150343800-150378600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:150344000-150361600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr1:150344200-150348800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
27 chr1:150344600-150349000 Enhancers HepG2 liver
28 chr1:150345000-150348400 Enhancers Fetal Heart heart
29 chr1:150345000-150348600 Enhancers Primary T regulatory cells fromperipheralblood blood
30 chr1:150345200-150350600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:150345400-150351200 Weak transcription Fetal Intestine Small intestine
32 chr1:150345400-150358600 Weak transcription Fetal Intestine Large intestine
33 chr1:150346000-150348800 Enhancers Primary T killer memory cells from peripheral blood blood
34 chr1:150346200-150348600 Enhancers Brain Angular Gyrus brain
35 chr1:150346200-150348600 Enhancers Brain Inferior Temporal Lobe brain
36 chr1:150346200-150348600 Enhancers Fetal Kidney kidney
37 chr1:150346200-150349000 Enhancers Brain Hippocampus Middle brain
38 chr1:150346400-150348400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:150346400-150348400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
40 chr1:150346400-150348600 Enhancers Cortex derived primary cultured neurospheres brain
41 chr1:150346400-150348800 Enhancers Brain Substantia Nigra brain
42 chr1:150346400-150348800 Enhancers GM12878-XiMat blood
43 chr1:150346400-150349000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
44 chr1:150346400-150349000 Enhancers Brain Anterior Caudate brain
45 chr1:150346600-150348400 Enhancers Hela-S3 cervix
46 chr1:150346600-150348600 Enhancers Breast Myoepithelial Primary Cells Breast
47 chr1:150346800-150348600 Enhancers Duodenum Smooth Muscle Duodenum
48 chr1:150346800-150348800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr1:150346800-150349000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr1:150346800-150358200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015