Variant report

Variant rs3895842
Chromosome Location chr19:23411952-23411953
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23398000-23431600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr19:23399600-23425200 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
3 chr19:23399600-23429000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr19:23400000-23414200 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr19:23400000-23423600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr19:23400400-23430600 ZNF genes & repeats Dnd41 blood
7 chr19:23400400-23432000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr19:23400600-23412600 ZNF genes & repeats Liver Liver
9 chr19:23401000-23416200 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
10 chr19:23401600-23417800 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
11 chr19:23401800-23414200 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr19:23401800-23428200 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
13 chr19:23402000-23414200 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
14 chr19:23402200-23412600 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
15 chr19:23402200-23414000 ZNF genes & repeats H1 Cell Line embryonic stem cell
16 chr19:23402200-23417800 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
17 chr19:23402200-23419600 ZNF genes & repeats iPS-18 Cell Line embryonic stem cell
18 chr19:23402200-23431400 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
19 chr19:23403400-23412600 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr19:23404000-23431200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr19:23404200-23417200 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr19:23404400-23414200 ZNF genes & repeats Fetal Brain Female brain
23 chr19:23404400-23414200 ZNF genes & repeats Fetal Lung lung
24 chr19:23404400-23414200 ZNF genes & repeats HepG2 liver
25 chr19:23404600-23412600 ZNF genes & repeats Primary B cells from cord blood blood
26 chr19:23404600-23415600 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
27 chr19:23404800-23414200 ZNF genes & repeats GM12878-XiMat blood
28 chr19:23405000-23414800 ZNF genes & repeats Primary B cells from peripheral blood blood
29 chr19:23405400-23414800 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
30 chr19:23405800-23415000 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
31 chr19:23406200-23412400 ZNF genes & repeats Primary monocytes fromperipheralblood blood
32 chr19:23407000-23412000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr19:23407200-23412000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
34 chr19:23407200-23414600 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr19:23407200-23422200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr19:23407600-23412000 Weak transcription NH-A brain
37 chr19:23408800-23412000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
38 chr19:23409200-23416600 Weak transcription Psoas Muscle Psoas
39 chr19:23409400-23415600 Weak transcription ES-WA7 Cell Line embryonic stem cell
40 chr19:23409600-23412200 Weak transcription Primary T killer memory cells from peripheral blood blood
41 chr19:23409600-23414400 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr19:23409800-23412600 ZNF genes & repeats Primary Natural Killer cells fromperipheralblood blood
43 chr19:23410000-23412800 ZNF genes & repeats H9 Cell Line embryonic stem cell
44 chr19:23410400-23412200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
45 chr19:23410400-23412600 ZNF genes & repeats Primary hematopoietic stem cells blood
46 chr19:23410600-23412600 ZNF genes & repeats ES-I3 Cell Line embryonic stem cell
47 chr19:23410600-23412600 ZNF genes & repeats Rectal Mucosa Donor 29 rectum
48 chr19:23410600-23413800 ZNF genes & repeats Primary T cells from cord blood blood
49 chr19:23410600-23414200 Strong transcription Muscle Satellite Cultured Cells --
50 chr19:23410800-23412200 ZNF genes & repeats Fetal Muscle Trunk muscle

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