Variant report

Variant	rs3897869
Chromosome Location	chr1:220846080-220846081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220843694..220846448-chr1:220920771..220922652,2	K562	blood:

Variant related genes	Relation type
ENSG00000117791	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10158764	1.00[AMR][1000 genomes]
rs10495148	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11799728	1.00[AMR][1000 genomes]
rs11800654	1.00[AMR][1000 genomes]
rs11800803	1.00[AMR][1000 genomes]
rs11801239	1.00[AMR][1000 genomes]
rs11802247	1.00[AMR][1000 genomes]
rs11802248	1.00[AMR][1000 genomes]
rs11806648	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806710	1.00[AMR][1000 genomes]
rs11807413	1.00[AMR][1000 genomes]
rs11808530	1.00[AMR][1000 genomes]
rs11810690	1.00[AMR][1000 genomes]
rs11811042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11811445	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11811872	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17007924	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17008033	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17008084	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17008159	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17008391	1.00[AMR][1000 genomes]
rs3849285	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3897868	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61195656	1.00[AMR][1000 genomes]
rs6660112	1.00[AMR][1000 genomes]
rs6665732	1.00[AMR][1000 genomes]
rs6670387	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6696558	1.00[AMR][1000 genomes]
rs6704108	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7512854	1.00[AMR][1000 genomes]
rs7519187	1.00[AMR][1000 genomes]
rs7523054	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7524156	1.00[AMR][1000 genomes]
rs7530121	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7550011	1.00[AMR][1000 genomes]
rs767374	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468194	chr1:220845610-220885612	Bivalent Enhancer Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv549227	chr1:220845610-220885612	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220829400-220847200	Weak transcription	Right Ventricle	heart
2	chr1:220845800-220846200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:220845800-220848000	Enhancers	Fetal Heart	heart
4	chr1:220846000-220846200	Bivalent Enhancer	Small Intestine	intestine

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