Variant report

Variant	rs402670
Chromosome Location	chr6:14905523-14905524
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs395235	1.00[EUR][1000 genomes]
rs417362	1.00[EUR][1000 genomes]
rs443077	1.00[EUR][1000 genomes]
rs62390348	0.93[EUR][1000 genomes]
rs62390349	0.93[EUR][1000 genomes]
rs62390350	0.93[EUR][1000 genomes]
rs62390351	0.93[EUR][1000 genomes]
rs62390354	0.93[EUR][1000 genomes]
rs62390355	0.93[EUR][1000 genomes]
rs62390356	0.93[EUR][1000 genomes]
rs62390357	0.85[EUR][1000 genomes]
rs62390358	0.85[EUR][1000 genomes]
rs62390359	0.85[EUR][1000 genomes]
rs9464732	0.93[EUR][1000 genomes]
rs9476682	0.93[EUR][1000 genomes]
rs9476685	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14894400-14912400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14894400-14915800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:14902400-14906800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:14902600-14921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:14904400-14909400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:14904400-14909600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:14904400-14909800	Weak transcription	Primary B cells from cord blood	blood
8	chr6:14904400-14910200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:14904400-14910400	Weak transcription	Fetal Thymus	thymus
10	chr6:14904600-14905600	Weak transcription	Esophagus	oesophagus
11	chr6:14904600-14909600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:14904600-14911800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:14904800-14906000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:14905400-14905600	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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