Variant report

Variant	rs62390348
Chromosome Location	chr6:14892248-14892249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs395235	0.93[EUR][1000 genomes]
rs402670	0.93[EUR][1000 genomes]
rs417362	0.93[EUR][1000 genomes]
rs443077	0.93[EUR][1000 genomes]
rs62390349	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390350	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390351	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390352	1.00[AMR][1000 genomes]
rs62390354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390355	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390357	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390358	0.92[EUR][1000 genomes]
rs62390359	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9464732	1.00[EUR][1000 genomes]
rs9476682	1.00[EUR][1000 genomes]
rs9476685	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14884800-14892800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14884800-14893800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:14885200-14893400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:14885200-14893600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:14890600-14893400	Weak transcription	Lung	lung
6	chr6:14890800-14897000	Weak transcription	Stomach Mucosa	stomach
7	chr6:14890800-14897800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:14891800-14893000	Weak transcription	Esophagus	oesophagus
9	chr6:14891800-14893600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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