Variant report

Variant	rs62390356
Chromosome Location	chr6:14911857-14911858
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs395235	0.93[EUR][1000 genomes]
rs402670	0.93[EUR][1000 genomes]
rs417362	0.93[EUR][1000 genomes]
rs443077	0.93[EUR][1000 genomes]
rs62390348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390349	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390351	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62390354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390355	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390357	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390358	0.92[EUR][1000 genomes]
rs62390359	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9464732	1.00[EUR][1000 genomes]
rs9476682	1.00[EUR][1000 genomes]
rs9476685	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14894400-14912400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14894400-14915800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:14902600-14921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:14905800-14924800	Weak transcription	Esophagus	oesophagus
5	chr6:14908400-14912600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:14909200-14913200	Weak transcription	Small Intestine	intestine
7	chr6:14909400-14912000	Weak transcription	Fetal Kidney	kidney
8	chr6:14909400-14913600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:14909800-14912200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:14910200-14912800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:14910200-14913400	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:14910400-14912000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:14910400-14912400	Enhancers	Dnd41	blood
14	chr6:14910400-14912800	Enhancers	Spleen	Spleen
15	chr6:14910400-14913000	Enhancers	Fetal Thymus	thymus
16	chr6:14910400-14913200	Enhancers	K562	blood
17	chr6:14910400-14913400	Enhancers	Thymus	Thymus
18	chr6:14910600-14912000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr6:14910600-14912000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr6:14910600-14913200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:14910800-14912000	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr6:14911000-14912200	Enhancers	Fetal Muscle Leg	muscle
23	chr6:14911200-14912000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr6:14911200-14912000	Weak transcription	Right Atrium	heart
25	chr6:14911200-14912200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr6:14911200-14912200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:14911200-14912400	Weak transcription	Gastric	stomach
28	chr6:14911200-14912400	Weak transcription	Pancreas	Pancrea
29	chr6:14911200-14912600	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr6:14911400-14912200	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr6:14911400-14912400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:14911400-14912400	Weak transcription	Stomach Mucosa	stomach
33	chr6:14911400-14912600	Enhancers	Primary hematopoietic stem cells	blood
34	chr6:14911400-14912600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr6:14911400-14913200	ZNF genes & repeats	GM12878-XiMat	blood
36	chr6:14911400-14913400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:14911400-14916400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:14911600-14912000	Weak transcription	Fetal Stomach	stomach
39	chr6:14911600-14912200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr6:14911600-14912400	Enhancers	Primary T cells from cord blood	blood
41	chr6:14911600-14912800	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr6:14911600-14913400	Enhancers	Primary B cells from cord blood	blood
43	chr6:14911600-14913400	Enhancers	Colon Smooth Muscle	Colon
44	chr6:14911800-14912000	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr6:14911800-14912800	Enhancers	Adipose Nuclei	Adipose
46	chr6:14911800-14913000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr6:14911800-14913200	Enhancers	Duodenum Mucosa	Duodenum
48	chr6:14911800-14913600	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links