Variant report

Variant	rs62390357
Chromosome Location	chr6:14918929-14918930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14918253..14920493-chr6:15156735..15158710,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs395235	0.85[EUR][1000 genomes]
rs402670	0.85[EUR][1000 genomes]
rs417362	0.85[EUR][1000 genomes]
rs443077	0.85[EUR][1000 genomes]
rs62390348	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390349	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390350	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390351	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390352	1.00[AMR][1000 genomes]
rs62390354	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390355	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390356	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390358	1.00[EUR][1000 genomes]
rs62390359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464732	0.92[EUR][1000 genomes]
rs9476682	0.92[EUR][1000 genomes]
rs9476685	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14902600-14921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:14905800-14924800	Weak transcription	Esophagus	oesophagus
3	chr6:14912800-14921400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:14913000-14921000	Weak transcription	Fetal Thymus	thymus
5	chr6:14913400-14921800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:14913400-14924600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:14913600-14920200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:14914000-14924600	Weak transcription	Ovary	ovary
9	chr6:14914400-14921400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:14914400-14921800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:14916400-14919200	Enhancers	Spleen	Spleen
12	chr6:14916600-14920600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:14917000-14919000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:14917200-14921400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:14917200-14925800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:14917400-14920400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:14917400-14921000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:14917400-14921400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:14917400-14921600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:14917600-14921200	Weak transcription	K562	blood
21	chr6:14917600-14922200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:14917800-14919400	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:14918000-14921200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:14918000-14921200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:14918000-14921200	Weak transcription	Fetal Kidney	kidney
26	chr6:14918000-14921400	Weak transcription	HSMMtube	muscle
27	chr6:14918000-14921600	Weak transcription	HSMM	muscle
28	chr6:14918600-14919400	Enhancers	H9 Cell Line	embryonic stem cell
29	chr6:14918800-14919000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:14918800-14919400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:14918800-14919400	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr6:14918800-14919400	Enhancers	Gastric	stomach

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