Variant report

Variant	rs62390359
Chromosome Location	chr6:14921039-14921040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14919831..14923397-chr6:14924837..14928089,3	K562	blood:
2	chr6:14920549..14922410-chr6:15017214..15019242,2	K562	blood:
3	chr6:14920138..14921772-chr6:14924763..14926291,2	MCF-7	breast:
4	chr6:14920590..14923563-chr6:15089041..15090945,2	MCF-7	breast:
5	chr6:14919344..14922486-chr6:14925460..14927674,3	K562	blood:

Variant related genes	Relation type
ENSG00000234261	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs395235	0.85[EUR][1000 genomes]
rs402670	0.85[EUR][1000 genomes]
rs417362	0.85[EUR][1000 genomes]
rs443077	0.85[EUR][1000 genomes]
rs62390348	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390349	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390350	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390351	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390352	1.00[AMR][1000 genomes]
rs62390354	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390355	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390356	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62390357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390358	1.00[EUR][1000 genomes]
rs9464732	0.92[EUR][1000 genomes]
rs9476682	0.92[EUR][1000 genomes]
rs9476685	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14902600-14921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:14905800-14924800	Weak transcription	Esophagus	oesophagus
3	chr6:14912800-14921400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:14913400-14921800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:14913400-14924600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:14914000-14924600	Weak transcription	Ovary	ovary
7	chr6:14914400-14921400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:14914400-14921800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:14917200-14921400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:14917200-14925800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:14917400-14921400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:14917400-14921600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:14917600-14921200	Weak transcription	K562	blood
14	chr6:14917600-14922200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:14918000-14921200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:14918000-14921200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:14918000-14921200	Weak transcription	Fetal Kidney	kidney
18	chr6:14918000-14921400	Weak transcription	HSMMtube	muscle
19	chr6:14918000-14921600	Weak transcription	HSMM	muscle
20	chr6:14919400-14921400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:14919400-14921400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:14919400-14921800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:14919400-14925200	Weak transcription	Gastric	stomach
24	chr6:14919600-14921400	Weak transcription	Stomach Mucosa	stomach
25	chr6:14919800-14925800	Enhancers	Placenta	Placenta
26	chr6:14920400-14921200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:14920400-14921800	Enhancers	Primary B cells from cord blood	blood
28	chr6:14920400-14922800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:14920400-14923200	Enhancers	Fetal Stomach	stomach
30	chr6:14920400-14924000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:14920400-14926400	Enhancers	Fetal Muscle Leg	muscle
32	chr6:14920600-14923200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:14920600-14923600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr6:14920800-14921200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:14920800-14923800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
36	chr6:14920800-14925800	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr6:14921000-14921200	Enhancers	Fetal Thymus	thymus
38	chr6:14921000-14921600	Enhancers	Brain Anterior Caudate	brain
39	chr6:14921000-14921600	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr6:14921000-14922000	Enhancers	Right Atrium	heart
41	chr6:14921000-14922200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:14921000-14922200	Enhancers	Lung	lung
43	chr6:14921000-14922400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr6:14921000-14923400	Enhancers	Spleen	Spleen
45	chr6:14921000-14924000	Enhancers	Adipose Nuclei	Adipose
46	chr6:14921000-14924600	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr6:14921000-14925200	Enhancers	Fetal Muscle Trunk	muscle

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