Variant report

Variant	rs417362
Chromosome Location	chr6:14899485-14899486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs395235	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs402670	1.00[EUR][1000 genomes]
rs443077	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62390348	0.93[EUR][1000 genomes]
rs62390349	0.93[EUR][1000 genomes]
rs62390350	0.93[EUR][1000 genomes]
rs62390351	0.93[EUR][1000 genomes]
rs62390354	0.93[EUR][1000 genomes]
rs62390355	0.93[EUR][1000 genomes]
rs62390356	0.93[EUR][1000 genomes]
rs62390357	0.85[EUR][1000 genomes]
rs62390358	0.85[EUR][1000 genomes]
rs62390359	0.85[EUR][1000 genomes]
rs9464732	0.93[EUR][1000 genomes]
rs9476682	0.93[EUR][1000 genomes]
rs9476685	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs417362	UGT2B17	trans	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14894400-14912400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14894400-14915800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:14898000-14900000	Enhancers	Stomach Mucosa	stomach
4	chr6:14898600-14903400	Weak transcription	Thymus	Thymus
5	chr6:14898600-14903400	Weak transcription	GM12878-XiMat	blood
6	chr6:14899200-14902800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:14899200-14903400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:14899200-14903600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:14899400-14899800	Enhancers	Brain Substantia Nigra	brain
10	chr6:14899400-14902400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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