Variant report

Variant	rs4299888
Chromosome Location	chr7:70952874-70952875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70923018..70925671-chr7:70952208..70954590,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10274606	0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4595007	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4719126	0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55744623	1.00[AMR][1000 genomes]
rs55967920	1.00[AMR][1000 genomes]
rs56235392	1.00[AMR][1000 genomes]
rs60213385	1.00[AMR][1000 genomes]
rs60410337	1.00[AMR][1000 genomes]
rs61271681	1.00[AMR][1000 genomes]
rs6415226	1.00[AMR][1000 genomes]
rs6946985	1.00[AMR][1000 genomes]
rs6969742	1.00[AMR][1000 genomes]
rs73700987	1.00[AMR][1000 genomes]
rs73700992	1.00[AMR][1000 genomes]
rs73700993	1.00[AMR][1000 genomes]
rs73700994	1.00[AMR][1000 genomes]
rs73700995	1.00[AMR][1000 genomes]
rs73700996	1.00[AMR][1000 genomes]
rs73702308	1.00[AMR][1000 genomes]
rs73702309	1.00[AMR][1000 genomes]
rs7779076	0.81[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7791088	1.00[AMR][1000 genomes]
rs7802297	1.00[AMR][1000 genomes]
rs7808680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70941400-70953200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:70944000-70962200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:70944200-70962200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:70945000-70954200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:70945400-70962000	Weak transcription	Fetal Stomach	stomach
6	chr7:70946800-70972600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:70947800-70972600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:70948000-70954000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:70948200-70962200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:70949800-70953200	Weak transcription	Ovary	ovary
11	chr7:70950600-70953400	Enhancers	HSMM	muscle
12	chr7:70950600-70953400	Enhancers	NHDF-Ad	bronchial
13	chr7:70950800-70954000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:70951400-70953000	Enhancers	Osteobl	bone
15	chr7:70951400-70953400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:70951400-70955000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:70951600-70953400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr7:70951600-70953600	Enhancers	HSMMtube	muscle
19	chr7:70951600-70960800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:70951800-70953000	Enhancers	Fetal Muscle Leg	muscle
21	chr7:70952000-70953400	Enhancers	NH-A	brain
22	chr7:70952200-70953200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:70952200-70953600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:70952200-70954000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr7:70952200-70961200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:70952400-70953200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:70952400-70953400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:70952600-70953000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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