Variant report

Variant	rs60410337
Chromosome Location	chr7:70899295-70899296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10274606	1.00[AMR][1000 genomes]
rs4299888	1.00[AMR][1000 genomes]
rs4595007	1.00[AMR][1000 genomes]
rs4719126	1.00[AMR][1000 genomes]
rs55744623	1.00[AMR][1000 genomes]
rs55967920	1.00[AMR][1000 genomes]
rs56235392	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60213385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61271681	1.00[AMR][1000 genomes]
rs6415226	1.00[AMR][1000 genomes]
rs6946985	1.00[AMR][1000 genomes]
rs6969742	1.00[AMR][1000 genomes]
rs73700987	1.00[AMR][1000 genomes]
rs73700992	1.00[AMR][1000 genomes]
rs73700993	1.00[AMR][1000 genomes]
rs73700994	1.00[AMR][1000 genomes]
rs73700995	1.00[AMR][1000 genomes]
rs73700996	1.00[AMR][1000 genomes]
rs73702308	1.00[AMR][1000 genomes]
rs73702309	1.00[AMR][1000 genomes]
rs7779076	1.00[AMR][1000 genomes]
rs7791088	1.00[AMR][1000 genomes]
rs7794396	1.00[AMR][1000 genomes]
rs7802297	1.00[AMR][1000 genomes]
rs7808680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70881000-70901200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:70886200-70903600	Weak transcription	Aorta	Aorta
3	chr7:70888200-70923000	Weak transcription	Ovary	ovary
4	chr7:70889600-70907600	Weak transcription	Fetal Lung	lung
5	chr7:70891600-70901000	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:70891800-70907400	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:70892800-70901800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:70894800-70901800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:70896400-70899800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:70897400-70900200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:70897400-70901400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:70898000-70901200	Weak transcription	Fetal Stomach	stomach
13	chr7:70898400-70900200	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr7:70898400-70903600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:70898400-70907800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr7:70898800-70900000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:70899000-70899600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:70899000-70899800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:70899000-70904600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:70899200-70899600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr7:70899200-70899600	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:70899200-70899800	Genic enhancers	HUES64 Cell Line	embryonic stem cell

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