Variant report

Variant	rs6946985
Chromosome Location	chr7:70788594-70788595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10274606	1.00[AMR][1000 genomes]
rs4299888	1.00[AMR][1000 genomes]
rs4595007	1.00[AMR][1000 genomes]
rs4719126	1.00[AMR][1000 genomes]
rs55744623	1.00[AMR][1000 genomes]
rs55967920	1.00[AMR][1000 genomes]
rs56235392	1.00[AMR][1000 genomes]
rs56941376	1.00[AMR][1000 genomes]
rs57415756	1.00[AMR][1000 genomes]
rs60213385	1.00[AMR][1000 genomes]
rs60410337	1.00[AMR][1000 genomes]
rs61271681	1.00[AMR][1000 genomes]
rs61599788	1.00[AMR][1000 genomes]
rs6415226	1.00[AMR][1000 genomes]
rs6969742	1.00[AMR][1000 genomes]
rs73700987	1.00[AMR][1000 genomes]
rs73700992	1.00[AMR][1000 genomes]
rs73700993	1.00[AMR][1000 genomes]
rs73700994	1.00[AMR][1000 genomes]
rs73700995	1.00[AMR][1000 genomes]
rs73700996	1.00[AMR][1000 genomes]
rs73702308	1.00[AMR][1000 genomes]
rs73702309	1.00[AMR][1000 genomes]
rs7779076	1.00[AMR][1000 genomes]
rs7791088	1.00[AMR][1000 genomes]
rs7794396	1.00[AMR][1000 genomes]
rs7802297	1.00[AMR][1000 genomes]
rs7808680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:70777000-70788800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:70780800-70789200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
6	chr7:70785000-70790000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:70786000-70790200	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:70786200-70788600	Weak transcription	Fetal Lung	lung
9	chr7:70786600-70788800	Weak transcription	Fetal Heart	heart
10	chr7:70787800-70795400	Weak transcription	Ovary	ovary
11	chr7:70788000-70788800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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