Variant report

Variant	rs61271681
Chromosome Location	chr7:70908894-70908895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10274606	1.00[AMR][1000 genomes]
rs4299888	1.00[AMR][1000 genomes]
rs4595007	1.00[AMR][1000 genomes]
rs4719126	1.00[AMR][1000 genomes]
rs55744623	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55967920	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56235392	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60213385	1.00[AMR][1000 genomes]
rs60410337	1.00[AMR][1000 genomes]
rs6415226	1.00[AMR][1000 genomes]
rs6946985	1.00[AMR][1000 genomes]
rs6969742	1.00[AMR][1000 genomes]
rs73700987	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700992	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700993	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700994	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700995	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700996	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702308	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702309	1.00[AMR][1000 genomes]
rs7779076	1.00[AMR][1000 genomes]
rs7791088	1.00[AMR][1000 genomes]
rs7794396	1.00[AMR][1000 genomes]
rs7802297	1.00[AMR][1000 genomes]
rs7808680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70888200-70923000	Weak transcription	Ovary	ovary
2	chr7:70899600-70909200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:70903600-70912000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:70905000-70929000	Weak transcription	Right Atrium	heart
5	chr7:70907400-70909600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:70907600-70909200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:70907600-70909600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:70908000-70909200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr7:70908200-70909400	Enhancers	Thymus	Thymus
10	chr7:70908200-70909400	Enhancers	HSMMtube	muscle
11	chr7:70908400-70909200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr7:70908400-70909200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:70908400-70911600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:70908400-70912400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:70908400-70912800	Weak transcription	Fetal Heart	heart
16	chr7:70908400-70922400	Weak transcription	Fetal Stomach	stomach
17	chr7:70908400-70935200	Weak transcription	Fetal Lung	lung
18	chr7:70908600-70909000	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:70908600-70909200	Enhancers	Dnd41	blood
20	chr7:70908600-70909800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:70908600-70910400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:70908600-70911800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr7:70908600-70911800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:70908600-70912200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr7:70908600-70912600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr7:70908600-70912800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:70908600-70912800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:70908600-70921800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:70908600-70923000	Weak transcription	Fetal Muscle Trunk	muscle

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