Variant report

Variant	rs55744623
Chromosome Location	chr7:70929225-70929226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10274606	1.00[AMR][1000 genomes]
rs4299888	1.00[AMR][1000 genomes]
rs4595007	1.00[AMR][1000 genomes]
rs4719126	1.00[AMR][1000 genomes]
rs55967920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56235392	1.00[AMR][1000 genomes]
rs60213385	1.00[AMR][1000 genomes]
rs60410337	1.00[AMR][1000 genomes]
rs61271681	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6415226	1.00[AMR][1000 genomes]
rs6946985	1.00[AMR][1000 genomes]
rs6969742	1.00[AMR][1000 genomes]
rs73700987	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700992	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700993	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700995	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702309	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7779076	1.00[AMR][1000 genomes]
rs7791088	1.00[AMR][1000 genomes]
rs7794396	1.00[AMR][1000 genomes]
rs7802297	1.00[AMR][1000 genomes]
rs7808680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70908400-70935200	Weak transcription	Fetal Lung	lung
2	chr7:70923800-70935200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:70925400-70929600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:70927000-70929400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:70927000-70929600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:70927000-70929600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:70927000-70929800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:70927200-70929400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:70927200-70929400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:70927200-70929400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:70927200-70929800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:70927200-70937800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:70927400-70929600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:70928200-70929400	Enhancers	Ovary	ovary
15	chr7:70928200-70929600	Enhancers	Fetal Heart	heart
16	chr7:70928200-70932400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:70928800-70930800	Enhancers	Right Ventricle	heart
18	chr7:70929000-70929400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:70929000-70929800	Enhancers	Left Ventricle	heart
20	chr7:70929200-70932400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:70929200-70932800	Enhancers	H1 Cell Line	embryonic stem cell
22	chr7:70929200-70933000	Enhancers	HUES6 Cell Line	embryonic stem cell

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