Variant report

Variant	rs7802297
Chromosome Location	chr7:70958236-70958237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10274606	0.90[LWK][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4299888	1.00[AMR][1000 genomes]
rs4595007	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4719126	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55744623	1.00[AMR][1000 genomes]
rs55967920	1.00[AMR][1000 genomes]
rs56235392	1.00[AMR][1000 genomes]
rs60213385	1.00[AMR][1000 genomes]
rs60410337	1.00[AMR][1000 genomes]
rs61271681	1.00[AMR][1000 genomes]
rs6415226	1.00[AMR][1000 genomes]
rs6946985	1.00[AMR][1000 genomes]
rs6969742	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700987	1.00[AMR][1000 genomes]
rs73700992	1.00[AMR][1000 genomes]
rs73700993	1.00[AMR][1000 genomes]
rs73700994	1.00[AMR][1000 genomes]
rs73700995	1.00[AMR][1000 genomes]
rs73700996	1.00[AMR][1000 genomes]
rs73702308	1.00[AMR][1000 genomes]
rs73702309	1.00[AMR][1000 genomes]
rs7779076	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7791088	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7808680	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70944000-70962200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:70944200-70962200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:70945400-70962000	Weak transcription	Fetal Stomach	stomach
4	chr7:70946800-70972600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:70947800-70972600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:70948200-70962200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:70951600-70960800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:70952200-70961200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:70953400-70962000	Weak transcription	Ovary	ovary
10	chr7:70953600-70962200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:70954600-70962200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:70954800-70960600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr7:70954800-70960800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:70955000-70962000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:70955000-70962200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:70955000-70962400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:70955400-70962400	Weak transcription	Fetal Heart	heart
18	chr7:70956600-70962000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr7:70956800-70960600	Weak transcription	Fetal Muscle Leg	muscle
20	chr7:70956800-70962400	Weak transcription	Fetal Lung	lung

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