Variant report

Variant	rs4460848
Chromosome Location	chr12:123677810-123677811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:123464791..123466594-chr12:123677706..123679809,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150967	Chromatin interaction
ENSG00000182196	Chromatin interaction

Extended variants
information (count: 191 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:185)

rs_ID	r²[population]
rs1047158	0.80[EUR][1000 genomes]
rs1051431	0.92[ASW][hapmap];0.89[CEU][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs1051434	0.82[TSI][hapmap]
rs1060105	0.84[TSI][hapmap]
rs10732573	0.90[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs10744150	0.90[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10744151	0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10744152	0.84[JPT][hapmap]
rs10772993	0.81[EUR][1000 genomes]
rs10772995	0.83[EUR][1000 genomes]
rs10772997	0.85[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10772998	0.89[CEU][hapmap]
rs10772999	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10773002	0.92[ASW][hapmap];0.85[CEU][hapmap];0.90[CHB][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap]
rs10846478	0.83[EUR][1000 genomes]
rs10846486	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs10846517	0.84[JPT][hapmap]
rs10846519	0.84[JPT][hapmap]
rs10846523	0.84[JPT][hapmap]
rs11057189	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11057192	0.85[ASW][hapmap];0.84[CEU][hapmap];0.80[MKK][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs11057202	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11057205	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11057207	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11057209	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11057287	0.84[JPT][hapmap]
rs1106240	0.89[CEU][hapmap];0.84[TSI][hapmap]
rs1106241	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs11610710	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12229700	0.80[EUR][1000 genomes]
rs12298826	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs12316131	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs12322888	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs1260294	0.84[CEU][hapmap];0.84[GIH][hapmap];0.81[TSI][hapmap]
rs12817892	0.84[CEU][hapmap]
rs1402274	0.85[ASW][hapmap];0.89[CEU][hapmap];0.87[GIH][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs1402275	0.81[GIH][hapmap]
rs1533703	0.82[CEU][hapmap]
rs1568427	0.92[ASW][hapmap];0.81[CEU][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.82[LWK][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs1569068	0.89[CEU][hapmap];0.86[TSI][hapmap]
rs1609520	0.90[CEU][hapmap];0.91[CHB][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1615350	0.92[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1615694	0.82[EUR][1000 genomes]
rs1617156	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs1621194	0.82[EUR][1000 genomes]
rs1626899	0.82[EUR][1000 genomes]
rs1627724	0.80[EUR][1000 genomes]
rs1630693	0.82[EUR][1000 genomes]
rs1630905	0.83[EUR][1000 genomes]
rs1716157	0.85[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs1716159	0.83[EUR][1000 genomes]
rs1716160	0.85[ASW][hapmap];0.89[CEU][hapmap];0.87[GIH][hapmap];0.80[MKK][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs1716164	0.85[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs1716165	0.92[ASW][hapmap];0.89[CEU][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs1716167	0.92[ASW][hapmap];0.89[CEU][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs1716168	0.92[ASW][hapmap];0.89[CEU][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs1716170	0.85[ASW][hapmap];0.89[CEU][hapmap];0.80[MKK][hapmap];0.84[TSI][hapmap]
rs1716171	0.85[ASW][hapmap];0.89[CEU][hapmap];0.80[MKK][hapmap];0.84[TSI][hapmap]
rs1716173	0.80[EUR][1000 genomes]
rs1716175	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs1716176	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1716177	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1716178	0.80[EUR][1000 genomes]
rs1716180	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1716182	0.82[EUR][1000 genomes]
rs1727286	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1727290	0.84[EUR][1000 genomes]
rs1727293	0.83[TSI][hapmap]
rs1727294	0.88[CEU][hapmap]
rs1727296	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1727300	0.81[EUR][1000 genomes]
rs1727301	0.92[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1727302	1.00[CEU][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.84[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1727306	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs1727309	0.89[CEU][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs1727310	0.81[EUR][1000 genomes]
rs1727313	0.89[CEU][hapmap];0.84[TSI][hapmap]
rs1727315	0.92[ASW][hapmap];0.89[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs1727319	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1727320	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1727323	0.85[ASW][hapmap];0.89[CEU][hapmap];0.87[GIH][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs1727324	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs1727325	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1727331	0.90[CEU][hapmap];0.91[CHB][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1727332	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1727334	0.81[CEU][hapmap]
rs1790086	0.83[EUR][1000 genomes]
rs1790087	0.83[EUR][1000 genomes]
rs1790088	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1790089	0.85[EUR][1000 genomes]
rs1790090	0.80[EUR][1000 genomes]
rs1790095	0.85[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs1790098	0.85[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs1790099	0.85[ASW][hapmap]
rs1790100	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1790101	0.82[EUR][1000 genomes]
rs1790102	0.82[EUR][1000 genomes]
rs1790104	0.85[JPT][hapmap]
rs1790108	0.83[ASW][hapmap];0.89[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs1790109	0.80[EUR][1000 genomes]
rs1790116	0.83[ASW][hapmap];0.84[CEU][hapmap];0.86[TSI][hapmap]
rs1790123	0.89[CEU][hapmap];0.91[GIH][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs1790124	0.80[EUR][1000 genomes]
rs1790129	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1790130	0.84[EUR][1000 genomes]
rs1790131	0.85[ASW][hapmap];0.89[CEU][hapmap];0.87[GIH][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs1790134	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1879380	0.89[CEU][hapmap]
rs1969354	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs1980252	0.84[CEU][hapmap]
rs2049114	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2102949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280424	0.91[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2337934	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs2682427	0.92[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2682429	0.80[EUR][1000 genomes]
rs2682430	0.82[EUR][1000 genomes]
rs2682431	0.84[EUR][1000 genomes]
rs2682433	0.82[EUR][1000 genomes]
rs2682434	0.85[ASW][hapmap];0.89[CEU][hapmap];0.87[GIH][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs2695476	0.82[EUR][1000 genomes]
rs2695478	0.89[CEU][hapmap];0.91[GIH][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs2695479	0.81[EUR][1000 genomes]
rs2695480	0.81[EUR][1000 genomes]
rs2695481	0.80[EUR][1000 genomes]
rs2695482	0.89[CEU][hapmap]
rs28362667	0.90[ASN][1000 genomes]
rs28362669	0.88[ASN][1000 genomes]
rs28414347	0.84[JPT][hapmap]
rs28458312	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs28501453	0.84[JPT][hapmap]
rs2851436	0.81[EUR][1000 genomes]
rs2851438	0.80[EUR][1000 genomes]
rs2851443	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851447	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851450	0.84[EUR][1000 genomes]
rs2851451	0.83[EUR][1000 genomes]
rs28595660	0.84[JPT][hapmap]
rs28613486	0.84[JPT][hapmap]
rs28636834	0.84[TSI][hapmap]
rs2947099	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2950537	0.80[EUR][1000 genomes]
rs3018098	0.84[EUR][1000 genomes]
rs36121382	0.97[ASN][1000 genomes]
rs3759111	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3759113	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3759114	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs3803001	0.84[JPT][hapmap]
rs3825141	0.84[JPT][hapmap]
rs4372492	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs4474478	0.84[ASN][1000 genomes]
rs4474479	0.84[ASN][1000 genomes]
rs4594040	0.84[ASN][1000 genomes]
rs4759367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4759371	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs4759406	1.00[ASN][1000 genomes]
rs4759407	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4759408	0.91[ASN][1000 genomes]
rs4759409	0.84[CEU][hapmap]
rs4759411	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4759413	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs4759414	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs4759415	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs520088	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs57676984	0.91[ASN][1000 genomes]
rs58991895	0.84[ASN][1000 genomes]
rs60077920	0.91[ASN][1000 genomes]
rs60296110	1.00[ASN][1000 genomes]
rs61041384	0.86[ASN][1000 genomes]
rs61187102	0.84[ASN][1000 genomes]
rs61519741	0.82[ASN][1000 genomes]
rs641760	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs655293	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs7137286	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7297649	0.84[JPT][hapmap]
rs7304782	0.92[ASW][hapmap];0.90[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7313483	0.89[CEU][hapmap]
rs7953929	0.89[CEU][hapmap]
rs7959415	0.84[JPT][hapmap]
rs883263	0.84[TSI][hapmap]
rs884548	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs941305	0.89[CEU][hapmap]
rs941306	0.89[CEU][hapmap]
rs949142	0.80[EUR][1000 genomes]
rs9795593	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427924	chr12:123412172-123722059	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
2	esv1825473	chr12:123582855-123822503	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv870326	chr12:123585990-123719323	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2761773	chr12:123616003-123723460	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	esv1803368	chr12:123640853-123822503	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
6	esv1830566	chr12:123640853-123822503	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs4460848	RP11-282O18.3	cis	Esophagus Mucosa	GTEx
rs4460848	MPHOSPH9	Cis_1M	lymphoblastoid	RTeQTL
rs4460848	CDK2AP1	Cis_1M	lymphoblastoid	RTeQTL
rs4460848	ARL6IP4	Cis_1M	lymphoblastoid	RTeQTL
rs4460848	TMEM120B	cis	parietal	SCAN
rs4460848	ANAPC5	cis	parietal	SCAN
rs4460848	SBNO1	Cis_1M	lymphoblastoid	RTeQTL
rs4460848	CCDC92	cis	cerebellum	SCAN
rs4460848	CDK2AP1	cis	Esophagus Mucosa	GTEx
rs4460848	PITPNM2	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123636600-123716600	Weak transcription	Esophagus	oesophagus
2	chr12:123636800-123679600	Weak transcription	Colonic Mucosa	Colon
3	chr12:123636800-123687400	Weak transcription	Psoas Muscle	Psoas
4	chr12:123637000-123713000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:123637200-123716400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:123638600-123687200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:123638800-123685000	Strong transcription	Fetal Thymus	thymus
8	chr12:123648400-123679200	Strong transcription	Thymus	Thymus
9	chr12:123650400-123686400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr12:123650600-123685800	Weak transcription	Small Intestine	intestine
11	chr12:123650600-123687200	Weak transcription	Pancreas	Pancrea
12	chr12:123650600-123716400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr12:123652800-123707800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr12:123654000-123707000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:123654200-123712000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:123654200-123715400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr12:123654600-123683000	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr12:123655000-123681000	Strong transcription	Fetal Muscle Trunk	muscle
19	chr12:123655000-123707200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr12:123655000-123708000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr12:123655000-123712000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr12:123655200-123682200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr12:123657000-123680600	Strong transcription	Fetal Stomach	stomach
24	chr12:123657000-123680800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr12:123658600-123682000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr12:123661400-123687200	Weak transcription	Fetal Brain Male	brain
27	chr12:123664200-123678000	Weak transcription	Fetal Kidney	kidney
28	chr12:123665000-123685800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr12:123665800-123703800	Weak transcription	Stomach Mucosa	stomach
30	chr12:123667600-123695000	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr12:123667800-123682000	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr12:123668200-123680000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr12:123668200-123680200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr12:123668200-123682000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr12:123668200-123682000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr12:123668200-123703600	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr12:123668400-123679600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr12:123669200-123695400	Strong transcription	Dnd41	blood
39	chr12:123669400-123681200	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr12:123669400-123682000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr12:123669600-123701200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr12:123670000-123679200	Strong transcription	Duodenum Mucosa	Duodenum
43	chr12:123670000-123679800	Strong transcription	Fetal Lung	lung
44	chr12:123670000-123680000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr12:123670000-123680000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr12:123670000-123680600	Strong transcription	Primary B cells from cord blood	blood
47	chr12:123670400-123678000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr12:123671000-123679800	Strong transcription	GM12878-XiMat	blood
49	chr12:123671600-123678600	Strong transcription	Adipose Nuclei	Adipose
50	chr12:123671600-123679000	Strong transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links