Variant report

Variant	rs28501453
Chromosome Location	chr12:123877312-123877313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:123876498..123879364-chr12:123956037..123958507,2	MCF-7	breast:
2	chr12:123876515..123878162-chr12:123919319..123921782,2	MCF-7	breast:
3	chr12:123876805..123878620-chr12:123900011..123901536,2	MCF-7	breast:
4	chr12:123876121..123878212-chr12:124088472..124090706,2	MCF-7	breast:
5	chr12:123847748..123850760-chr12:123875045..123877875,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139697	Chromatin interaction
ENSG00000256092	Chromatin interaction
ENSG00000111364	Chromatin interaction
ENSG00000150977	Chromatin interaction

Extended variants
information (count: 168 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs10082867	0.81[ASN][1000 genomes]
rs10444439	0.82[JPT][hapmap]
rs10732573	0.94[JPT][hapmap]
rs10734902	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10744150	0.94[JPT][hapmap]
rs10744151	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10744152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10744153	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10744154	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10772997	1.00[JPT][hapmap]
rs10773002	0.94[JPT][hapmap]
rs10773003	0.94[CHD][hapmap];0.84[JPT][hapmap]
rs10773005	0.94[CHD][hapmap];0.84[JPT][hapmap]
rs10773012	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10773013	0.88[ASN][1000 genomes]
rs10773018	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10846489	0.80[CHD][hapmap]
rs10846517	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10846519	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10846520	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10846523	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11057223	0.80[CHD][hapmap]
rs11057248	0.82[ASN][1000 genomes]
rs11057251	0.94[CHD][hapmap];0.84[JPT][hapmap]
rs11057254	0.81[ASN][1000 genomes]
rs11057261	0.81[ASN][1000 genomes]
rs11057273	0.81[ASN][1000 genomes]
rs11057276	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11057283	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11057284	0.81[ASN][1000 genomes]
rs11057287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1109559	0.80[CHD][hapmap]
rs11608305	0.84[JPT][hapmap]
rs11611141	0.81[ASN][1000 genomes]
rs11611694	0.81[ASN][1000 genomes]
rs11612234	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11613711	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12317103	0.81[ASN][1000 genomes]
rs12317452	0.84[JPT][hapmap]
rs12366872	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1568427	0.94[JPT][hapmap]
rs1609520	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs1660	0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1727331	0.94[JPT][hapmap]
rs2048617	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2280424	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs28410096	0.94[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs28414347	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417583	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418709	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28419092	0.81[ASN][1000 genomes]
rs28435460	0.84[ASN][1000 genomes]
rs28446728	0.90[ASN][1000 genomes]
rs28450974	0.83[ASN][1000 genomes]
rs28461471	0.83[ASN][1000 genomes]
rs28503862	0.83[ASN][1000 genomes]
rs28509440	0.85[ASN][1000 genomes]
rs28517382	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28532037	0.94[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs28533432	0.94[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs28537583	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28546238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28581850	0.83[ASN][1000 genomes]
rs28587386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28592032	0.83[ASN][1000 genomes]
rs28594416	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28595660	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28602967	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28604484	0.83[ASN][1000 genomes]
rs28605269	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28611282	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28613486	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627651	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28631903	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28660993	0.94[CHD][hapmap];0.84[JPT][hapmap]
rs28681105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28703745	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28706693	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28718696	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28733606	0.91[ASN][1000 genomes]
rs28759130	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28786830	0.83[ASN][1000 genomes]
rs28820735	0.83[ASN][1000 genomes]
rs28825193	0.83[ASN][1000 genomes]
rs28862317	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs28865692	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28885203	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3088303	0.94[CHD][hapmap];0.84[JPT][hapmap]
rs3759111	1.00[ASW][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap]
rs3759114	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs3803001	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3825141	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4460848	0.84[JPT][hapmap]
rs4759374	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4759376	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4759377	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs4759407	1.00[ASW][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap]
rs4759408	1.00[CEU][hapmap]
rs4759411	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs4759413	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs4759414	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs4759421	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56116847	0.80[ASN][1000 genomes]
rs57356592	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57416942	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58491161	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58537268	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58948739	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59295450	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60754073	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60755632	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60835840	0.81[ASN][1000 genomes]
rs61058270	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61388686	0.81[ASN][1000 genomes]
rs61751327	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6416289	0.86[ASN][1000 genomes]
rs6488869	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6488870	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6488871	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6488872	0.98[ASN][1000 genomes]
rs6488874	0.87[ASN][1000 genomes]
rs7137243	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7297649	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7297888	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7298909	0.81[ASN][1000 genomes]
rs7301163	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7304782	0.94[JPT][hapmap]
rs7310756	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7311304	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7312145	0.81[ASN][1000 genomes]
rs7315453	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs73216937	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7484644	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7485967	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7486223	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7486723	0.80[ASN][1000 genomes]
rs7488340	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952835	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7954704	0.81[ASN][1000 genomes]
rs7955367	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7959415	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7962723	0.84[ASN][1000 genomes]
rs7970080	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7971557	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7972811	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs7973131	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7973878	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7977563	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9284166	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9300256	0.95[ASN][1000 genomes]
rs9300257	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9300259	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9669169	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9669273	0.81[ASN][1000 genomes]
rs9669295	0.80[ASN][1000 genomes]
rs9739008	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9739171	0.81[ASN][1000 genomes]
rs9739565	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9795593	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038841	chr12:123757305-124087671	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv541622	chr12:123757305-124087671	Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1035223	chr12:123795559-123991706	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv899579	chr12:123843017-123901480	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	esv7028	chr12:123874023-123879670	Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	esv2417445	chr12:123875177-123879748	Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
7	esv3449892	chr12:123875199-123879684	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
8	esv8369	chr12:123875230-123879694	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
9	esv3414733	chr12:123875275-123879643	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123875000-123877400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr12:123875000-123878000	Genic enhancers	Dnd41	blood
3	chr12:123875000-123879000	Weak transcription	Ovary	ovary
4	chr12:123875000-123879200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr12:123875000-123881000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:123875000-123884400	Strong transcription	Thymus	Thymus
7	chr12:123875000-123886400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:123875200-123877400	Strong transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr12:123875200-123877400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:123875200-123877400	Genic enhancers	Muscle Satellite Cultured Cells	--
11	chr12:123875200-123879000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr12:123875200-123880800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr12:123875200-123881000	Strong transcription	Fetal Intestine Large	intestine
14	chr12:123875200-123884400	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr12:123875200-123884600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:123875200-123894400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:123875400-123879000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr12:123875400-123882200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr12:123875400-123882600	Strong transcription	Placenta	Placenta
20	chr12:123875400-123883600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:123875400-123884600	Strong transcription	Primary T cells from cord blood	blood
22	chr12:123875600-123877400	Genic enhancers	Brain Inferior Temporal Lobe	brain
23	chr12:123875600-123877600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr12:123875600-123877600	Genic enhancers	NHLF	lung
25	chr12:123875600-123878000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:123875600-123879600	Strong transcription	Fetal Kidney	kidney
27	chr12:123875600-123880800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr12:123875600-123881000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr12:123875600-123881600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr12:123875600-123882200	Strong transcription	Colon Smooth Muscle	Colon
31	chr12:123875600-123882800	Weak transcription	Psoas Muscle	Psoas
32	chr12:123875600-123884000	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr12:123875600-123884200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr12:123875600-123884200	Strong transcription	A549	lung
35	chr12:123875600-123884200	Strong transcription	GM12878-XiMat	blood
36	chr12:123875600-123884400	Strong transcription	HMEC	breast
37	chr12:123875600-123884600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr12:123875600-123885400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr12:123875600-123894200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr12:123875600-123895600	Strong transcription	Fetal Thymus	thymus
41	chr12:123875800-123877400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr12:123875800-123881200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr12:123875800-123881800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr12:123875800-123881800	Strong transcription	NH-A	brain
45	chr12:123875800-123882000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr12:123875800-123882200	Strong transcription	NHEK	skin
47	chr12:123875800-123884200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr12:123875800-123884600	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr12:123875800-123894000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr12:123876000-123877400	Strong transcription	ES-I3 Cell Line	embryonic stem cell

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