Variant report

Variant	rs9795593
Chromosome Location	chr12:123839052-123839053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr12:123838618-123839080	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:123838485..123840889-chr12:123846160..123848941,2	MCF-7	breast:
2	chr12:123831348..123835650-chr12:123835789..123840785,5	K562	blood:

Variant related genes	Relation type
SBNO1	TF binding region
ENSG00000256092	Chromatin interaction
ENSG00000139697	Chromatin interaction
ENSG00000207189	Chromatin interaction

Extended variants
information (count: 174 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs10082867	0.83[ASN][1000 genomes]
rs10444439	0.81[JPT][hapmap]
rs10732573	0.94[JPT][hapmap]
rs10734902	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10744150	0.94[JPT][hapmap]
rs10744151	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10744152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10744153	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10744154	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772997	1.00[JPT][hapmap]
rs10773002	0.94[JPT][hapmap]
rs10773003	0.94[CHD][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs10773004	0.81[ASN][1000 genomes]
rs10773005	0.94[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs10773006	0.81[ASN][1000 genomes]
rs10773012	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10773013	0.90[ASN][1000 genomes]
rs10773018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10846489	0.80[CHD][hapmap]
rs10846506	0.81[ASN][1000 genomes]
rs10846517	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10846519	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10846520	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs10846523	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11057223	0.80[CHD][hapmap]
rs11057248	0.84[ASN][1000 genomes]
rs11057251	0.94[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs11057254	0.83[ASN][1000 genomes]
rs11057261	0.83[ASN][1000 genomes]
rs11057273	0.83[ASN][1000 genomes]
rs11057276	0.94[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs11057283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11057284	0.83[ASN][1000 genomes]
rs11057287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1109559	0.80[CHD][hapmap]
rs11608305	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs11611141	0.83[ASN][1000 genomes]
rs11611677	0.81[ASN][1000 genomes]
rs11611694	0.83[ASN][1000 genomes]
rs11612234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11613711	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12315739	0.81[ASN][1000 genomes]
rs12317103	0.83[ASN][1000 genomes]
rs12317452	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs12366872	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs12367421	0.81[ASN][1000 genomes]
rs12582153	0.81[ASN][1000 genomes]
rs1568427	0.94[JPT][hapmap]
rs1609520	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs1660	0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1727331	0.94[JPT][hapmap]
rs2048617	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2280424	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs28410096	0.94[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs28414347	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28417583	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28418709	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28419092	0.83[ASN][1000 genomes]
rs28435460	0.82[ASN][1000 genomes]
rs28446728	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28450974	0.81[ASN][1000 genomes]
rs28461471	0.81[ASN][1000 genomes]
rs28498205	0.81[ASN][1000 genomes]
rs28501453	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28503862	0.81[ASN][1000 genomes]
rs28509440	0.83[ASN][1000 genomes]
rs28517382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532037	0.94[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs28533432	0.94[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs28537583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28546238	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28581850	0.81[ASN][1000 genomes]
rs28587386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28592032	0.81[ASN][1000 genomes]
rs28594416	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28595660	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28602967	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28604484	0.85[ASN][1000 genomes]
rs28605269	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28611282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28613486	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28627651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28631903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660993	0.94[CHD][hapmap];0.83[JPT][hapmap]
rs28681105	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28703745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28706693	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28718696	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28733606	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28759130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28786830	0.81[ASN][1000 genomes]
rs28820735	0.81[ASN][1000 genomes]
rs28825193	0.81[ASN][1000 genomes]
rs28862317	0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28865692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28885203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3088303	0.94[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs35818434	0.81[ASN][1000 genomes]
rs3759111	1.00[ASW][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap]
rs3759113	0.83[JPT][hapmap];1.00[MEX][hapmap]
rs3759114	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs3803001	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3825141	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4460848	0.83[JPT][hapmap]
rs4759367	0.81[JPT][hapmap]
rs4759374	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4759375	0.81[ASN][1000 genomes]
rs4759376	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4759377	0.94[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs4759407	1.00[ASW][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap]
rs4759408	1.00[CEU][hapmap]
rs4759411	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs4759413	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs4759414	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs4759421	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56116847	0.82[ASN][1000 genomes]
rs57356592	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57416942	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58491161	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58537268	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58948739	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59295450	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60754073	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60755632	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61058270	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61388686	0.83[ASN][1000 genomes]
rs61751327	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416289	0.88[ASN][1000 genomes]
rs6488869	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488870	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488871	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488872	1.00[ASN][1000 genomes]
rs6488874	0.89[ASN][1000 genomes]
rs7137243	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297649	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297888	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7298909	0.83[ASN][1000 genomes]
rs7301163	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304782	0.94[JPT][hapmap]
rs7310756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311304	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7312145	0.83[ASN][1000 genomes]
rs7315453	0.94[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs73216937	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73231950	0.81[ASN][1000 genomes]
rs7484644	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7485967	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7486223	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7486723	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7488340	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952835	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954704	0.83[ASN][1000 genomes]
rs7955367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7959415	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7962723	0.85[ASN][1000 genomes]
rs7970080	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971557	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7972811	0.94[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs7973131	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7973878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7977563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9284166	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300256	0.96[ASN][1000 genomes]
rs9300257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300259	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9669169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9669273	0.83[ASN][1000 genomes]
rs9669295	0.82[ASN][1000 genomes]
rs9739008	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9739171	0.83[ASN][1000 genomes]
rs9739565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038841	chr12:123757305-124087671	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv541622	chr12:123757305-124087671	Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1035223	chr12:123795559-123991706	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123772400-123847800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:123807600-123845200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:123815600-123842000	Weak transcription	Psoas Muscle	Psoas
4	chr12:123816000-123847400	Weak transcription	Stomach Mucosa	stomach
5	chr12:123820400-123847000	Weak transcription	Fetal Brain Male	brain
6	chr12:123829000-123839800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:123829000-123847400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr12:123829400-123840200	Weak transcription	Ovary	ovary
9	chr12:123830000-123847400	Weak transcription	Brain Substantia Nigra	brain
10	chr12:123830000-123847400	Weak transcription	Colonic Mucosa	Colon
11	chr12:123830000-123847400	Weak transcription	NHLF	lung
12	chr12:123830200-123842200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr12:123830200-123847400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr12:123830200-123847400	Weak transcription	NHDF-Ad	bronchial
15	chr12:123830200-123847600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr12:123830400-123840200	Weak transcription	HUVEC	blood vessel
17	chr12:123830400-123840600	Weak transcription	Small Intestine	intestine
18	chr12:123830400-123847600	Weak transcription	Aorta	Aorta
19	chr12:123830600-123847600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr12:123830800-123840200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr12:123830800-123844800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr12:123830800-123846600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:123830800-123847200	Weak transcription	Hela-S3	cervix
24	chr12:123830800-123847200	Weak transcription	HSMMtube	muscle
25	chr12:123832400-123848200	Weak transcription	Esophagus	oesophagus
26	chr12:123832600-123840200	Weak transcription	Lung	lung
27	chr12:123832600-123840200	Weak transcription	Pancreas	Pancrea
28	chr12:123832600-123840400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr12:123832600-123846400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr12:123832600-123846600	Weak transcription	Spleen	Spleen
31	chr12:123832800-123841200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr12:123832800-123847000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr12:123832800-123847000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr12:123832800-123847200	Weak transcription	Brain Anterior Caudate	brain
35	chr12:123832800-123847400	Weak transcription	Osteobl	bone
36	chr12:123832800-123847800	Weak transcription	Fetal Kidney	kidney
37	chr12:123833000-123840200	Weak transcription	Brain Angular Gyrus	brain
38	chr12:123833000-123841800	Weak transcription	Left Ventricle	heart
39	chr12:123833000-123847000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr12:123833000-123847000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr12:123833600-123841200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr12:123833800-123847600	Weak transcription	NH-A	brain
43	chr12:123834000-123840200	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr12:123834000-123847000	Weak transcription	Adipose Nuclei	Adipose
45	chr12:123834200-123840200	Weak transcription	Right Ventricle	heart
46	chr12:123834200-123847000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr12:123834200-123847400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr12:123834200-123847400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr12:123834200-123847400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr12:123834400-123846400	Weak transcription	Brain Hippocampus Middle	brain

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