Variant report

Variant	rs28533432
Chromosome Location	chr12:123873242-123873243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:182)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:182 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr12:123872419-123873358	GM12878	blood:	n/a	n/a
2	POLR2A	chr12:123872963-123873741	H1-neurons	neurons:	n/a	n/a
3	SIN3AK20	chr12:123872848-123873281	A549	lung:	n/a	n/a
4	MXI1	chr12:123872542-123875203	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr12:123871918-123873823	K562	blood:	n/a	n/a
6	CTCF	chr12:123873240-123873390	GM12865	blood:	n/a	n/a
7	POLR2A	chr12:123872977-123874022	HUVEC	blood vessel:	n/a	n/a
8	POLR2A	chr12:123872629-123873675	GM19193	blood:	n/a	n/a
9	NR3C1	chr12:123872970-123873827	A549	lung:	n/a	n/a
10	SMC3	chr12:123872973-123873416	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr12:123872815-123873244	GM12891	blood:	n/a	n/a
12	MAX	chr12:123872523-123873520	NB4	blood:	n/a	n/a
13	CTCF	chr12:123873240-123873390	AG10803	skin:	n/a	n/a
14	POLR2A	chr12:123872881-123873254	GM12892	blood:	n/a	n/a
15	POLR2A	chr12:123872611-123873322	GM12892	blood:	n/a	n/a
16	TAF1	chr12:123872884-123873514	H1-neurons	neurons:	n/a	n/a
17	STAT5A	chr12:123872506-123873387	GM12878	blood:	n/a	n/a
18	POLR2A	chr12:123873009-123873327	U87	brain:	n/a	n/a
19	SMC3	chr12:123873017-123873252	K562	blood:	n/a	n/a
20	POLR2A	chr12:123872518-123873732	GM12892	blood:	n/a	n/a
21	PAX5	chr12:123872976-123873267	GM12878	blood:	n/a	n/a
22	TAF1	chr12:123872787-123873342	GM12878	blood:	n/a	n/a
23	MTA3	chr12:123872367-123873247	GM12878	blood:	n/a	n/a
24	UBTF	chr12:123872089-123874739	K562	blood:	n/a	n/a
25	MAZ	chr12:123873111-123873714	Hela-S3	cervix:	n/a	n/a
26	CTCF	chr12:123873220-123873370	SAEC	small airway:	n/a	n/a
27	POLR2A	chr12:123872892-123873779	GM12892	blood:	n/a	n/a
28	CTCF	chr12:123873240-123873390	GM06990	blood:	n/a	n/a
29	POLR2A	chr12:123872559-123873723	Raji	blood:	n/a	n/a
30	TEAD4	chr12:123871696-123873389	K562	blood:	n/a	n/a
31	CEBPD	chr12:123871766-123873277	K562	blood:	n/a	n/a
32	NFYB	chr12:123872902-123873259	GM12878	blood:	n/a	n/a
33	POLR2A	chr12:123872972-123873619	GM12878	blood:	n/a	n/a
34	UBTF	chr12:123872256-123873580	K562	blood:	n/a	n/a
35	YY1	chr12:123872442-123873252	K562	blood:	n/a	n/a
36	ELF1	chr12:123872558-123873675	GM12878	blood:	n/a	chr12:123872747-123872758 chr12:123873365-123873377
37	MAZ	chr12:123872947-123875108	IMR90	lung:	n/a	chr12:123874490-123874499
38	CTCF	chr12:123873240-123873390	GM12864	blood:	n/a	n/a
39	CTCF	chr12:123873240-123873390	SK-N-SH_RA	brain:	n/a	n/a
40	ZBTB7A	chr12:123872702-123873761	K562	blood:	n/a	chr12:123873381-123873390
41	JUND	chr12:123872890-123873775	A549	lung:	n/a	n/a
42	EBF1	chr12:123872824-123873364	GM12878	blood:	n/a	n/a
43	POLR2A	chr12:123873084-123874637	NB4	blood:	n/a	n/a
44	POLR2A	chr12:123873017-123873838	MCF-7	breast:	n/a	n/a
45	HDAC2	chr12:123872643-123873364	K562	blood:	n/a	n/a
46	POLR2A	chr12:123872534-123873868	GM12878	blood:	n/a	n/a
47	SIN3AK20	chr12:123873037-123873308	PFSK-1	brain:	n/a	n/a
48	HEY1	chr12:123872893-123873257	K562	blood:	n/a	n/a
49	YY1	chr12:123872940-123873288	GM12891	blood:	n/a	n/a
50	POLR2A	chr12:123872536-123874596	GM18505	blood:	n/a	n/a

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:123845591..123852236-chr12:123866929..123875043,19	MCF-7	breast:
2	chr12:123715746..123718967-chr12:123870796..123875270,4	K562	blood:
3	chr12:123872355..123875545-chr12:123919640..123922793,3	MCF-7	breast:
4	chr12:123755164..123758333-chr12:123868507..123873426,5	K562	blood:
5	chr12:123872223..123875553-chr12:124085591..124088201,3	MCF-7	breast:
6	chr12:123845329..123854937-chr12:123865496..123876607,58	K562	blood:
7	chr12:123871392..123873266-chr12:123879118..123880787,2	K562	blood:
8	chr12:123872765..123874584-chr2:91935567..91938569,3	MCF-7	breast:
9	chr12:123871385..123875741-chr12:124017374..124019532,6	MCF-7	breast:
10	chr12:123753478..123757222-chr12:123871925..123875006,5	K562	blood:
11	chr12:123870684..123873491-chr12:123941342..123943069,2	MCF-7	breast:
12	chr12:123872778..123876196-chr12:124065295..124071344,6	MCF-7	breast:
13	chr12:123873193..123874940-chr12:123942406..123944140,2	K562	blood:
14	chr12:123753349..123756927-chr12:123873006..123875020,4	MCF-7	breast:
15	chr12:123753572..123756952-chr12:123872035..123874712,3	MCF-7	breast:
16	chr12:123871220..123873431-chr12:123897619..123900288,2	K562	blood:
17	chr12:123872784..123874602-chr17:59484787..59486930,2	MCF-7	breast:
18	chr12:123846590..123852305-chr12:123861449..123873718,39	K562	blood:
19	chr11:45825943..45826929-chr12:123873071..123873715,2	Hela-S3	cervix:
20	chr12:123870366..123875219-chr12:124064500..124069174,6	K562	blood:
21	chr12:123872056..123874942-chr12:124085224..124088307,3	MCF-7	breast:
22	chr12:123872416..123876102-chr12:124017252..124019601,4	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNRNP35-4	chr12:123872989-123873304	NONHSAT031588

No data

Variant related genes	Relation type
SETD8	TF binding region
ENSG00000111328	Chromatin interaction
ENSG00000130921	Chromatin interaction
ENSG00000051825	Chromatin interaction
ENSG00000111364	Chromatin interaction
ENSG00000232531	Chromatin interaction
ENSG00000139697	Chromatin interaction
ENSG00000247373	Chromatin interaction
ENSG00000086598	Chromatin interaction
ENSG00000188026	Chromatin interaction
ENSG00000181830	Chromatin interaction
ENSG00000256092	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000184209	Chromatin interaction
ENSG00000150977	Chromatin interaction

Extended variants
information (count: 172 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:162)

rs_ID	r²[population]
rs10082867	0.98[ASN][1000 genomes]
rs10444439	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs10444449	0.83[ASN][1000 genomes]
rs10744151	0.80[JPT][hapmap]
rs10744152	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs10744153	0.81[ASN][1000 genomes]
rs10744154	0.81[ASN][1000 genomes]
rs10772997	0.84[JPT][hapmap]
rs10773000	0.97[GIH][hapmap];0.94[JPT][hapmap]
rs10773003	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10773004	0.97[ASN][1000 genomes]
rs10773005	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10773006	0.97[ASN][1000 genomes]
rs10773018	0.80[ASN][1000 genomes]
rs10846489	0.84[CEU][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap]
rs10846497	0.83[ASN][1000 genomes]
rs10846505	0.89[ASN][1000 genomes]
rs10846506	0.95[ASN][1000 genomes]
rs10846517	0.82[CHB][hapmap];0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs10846519	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs10846523	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11057223	0.86[CHD][hapmap];0.94[JPT][hapmap]
rs11057238	0.85[ASN][1000 genomes]
rs11057242	0.93[ASN][1000 genomes]
rs11057248	0.93[ASN][1000 genomes]
rs11057251	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.97[ASN][1000 genomes]
rs11057254	0.98[ASN][1000 genomes]
rs11057261	0.98[ASN][1000 genomes]
rs11057273	0.90[CHB][hapmap];0.92[JPT][hapmap];0.98[ASN][1000 genomes]
rs11057275	0.95[ASN][1000 genomes]
rs11057276	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11057283	0.81[ASN][1000 genomes]
rs11057284	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11057287	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1109559	0.88[CEU][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap]
rs1109560	0.94[JPT][hapmap]
rs11503021	0.94[ASN][1000 genomes]
rs11608297	0.87[ASN][1000 genomes]
rs11608305	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11611141	0.98[ASN][1000 genomes]
rs11611677	0.96[ASN][1000 genomes]
rs11611679	0.94[ASN][1000 genomes]
rs11611680	0.94[ASN][1000 genomes]
rs11611694	0.98[ASN][1000 genomes]
rs11612234	0.81[ASN][1000 genomes]
rs12317103	0.98[ASN][1000 genomes]
rs12317452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12366872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12367421	0.95[ASN][1000 genomes]
rs12582153	0.95[ASN][1000 genomes]
rs13303208	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1568428	0.84[CEU][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.87[TSI][hapmap]
rs1790104	0.85[JPT][hapmap]
rs1879379	0.95[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap]
rs2271976	0.94[JPT][hapmap]
rs28410096	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28414347	0.94[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs28417583	0.83[ASN][1000 genomes]
rs28418709	0.81[ASN][1000 genomes]
rs28419092	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28450974	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28461471	1.00[ASN][1000 genomes]
rs28496545	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28498205	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28501453	0.94[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs28503862	1.00[ASN][1000 genomes]
rs28516750	0.96[ASN][1000 genomes]
rs28517382	0.81[ASN][1000 genomes]
rs28532037	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28537583	0.83[ASN][1000 genomes]
rs28540654	0.96[YRI][hapmap]
rs28546238	0.83[ASN][1000 genomes]
rs28556815	0.89[ASN][1000 genomes]
rs28565984	0.86[ASN][1000 genomes]
rs28574664	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28577594	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28581850	1.00[ASN][1000 genomes]
rs28587386	0.94[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs28592032	1.00[ASN][1000 genomes]
rs28594416	0.81[ASN][1000 genomes]
rs28595660	0.94[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs28602967	0.83[ASN][1000 genomes]
rs28611282	0.83[ASN][1000 genomes]
rs28613486	0.94[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs28631104	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28631903	0.81[ASN][1000 genomes]
rs28642812	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28660993	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs28681105	0.83[ASN][1000 genomes]
rs28690326	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28703745	0.80[ASN][1000 genomes]
rs28718696	0.80[ASN][1000 genomes]
rs28759130	0.81[ASN][1000 genomes]
rs28786830	1.00[ASN][1000 genomes]
rs28820735	1.00[ASN][1000 genomes]
rs28825193	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865692	0.82[ASN][1000 genomes]
rs28866344	0.96[ASN][1000 genomes]
rs28885203	0.82[ASN][1000 genomes]
rs28886709	0.81[ASN][1000 genomes]
rs3088303	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs34032470	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35818434	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3803001	0.94[CHD][hapmap];0.84[JPT][hapmap]
rs3825141	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs4759375	0.97[ASN][1000 genomes]
rs4759376	0.81[ASN][1000 genomes]
rs4759377	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4759421	0.81[ASN][1000 genomes]
rs56116847	0.98[ASN][1000 genomes]
rs56197170	0.85[ASN][1000 genomes]
rs56309603	0.92[ASN][1000 genomes]
rs57416942	0.81[ASN][1000 genomes]
rs59295450	0.81[ASN][1000 genomes]
rs60835840	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61388686	0.98[ASN][1000 genomes]
rs61751327	0.81[ASN][1000 genomes]
rs61955125	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6416290	0.85[ASN][1000 genomes]
rs6488868	0.81[ASW][hapmap];0.84[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs6488869	0.81[ASN][1000 genomes]
rs6488870	0.81[ASN][1000 genomes]
rs6488871	0.81[ASN][1000 genomes]
rs6488872	0.81[ASN][1000 genomes]
rs6488873	0.89[ASN][1000 genomes]
rs7137243	0.81[ASN][1000 genomes]
rs7139321	0.94[JPT][hapmap]
rs7297649	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs7298909	0.98[ASN][1000 genomes]
rs7301163	0.81[ASN][1000 genomes]
rs7303754	0.82[ASN][1000 genomes]
rs7310756	0.81[ASN][1000 genomes]
rs7311304	0.81[ASN][1000 genomes]
rs7312145	0.98[ASN][1000 genomes]
rs7315453	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs73216931	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73231950	0.95[ASN][1000 genomes]
rs7484644	0.81[ASN][1000 genomes]
rs7485967	0.81[ASN][1000 genomes]
rs7486223	0.81[ASN][1000 genomes]
rs7488340	0.81[ASN][1000 genomes]
rs7488490	0.80[ASN][1000 genomes]
rs7952835	0.81[ASN][1000 genomes]
rs7954704	0.98[ASN][1000 genomes]
rs7955367	0.81[ASN][1000 genomes]
rs7959415	0.94[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7970080	0.81[ASN][1000 genomes]
rs7972811	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7973131	0.81[ASN][1000 genomes]
rs7973878	0.81[ASN][1000 genomes]
rs7974099	0.87[ASN][1000 genomes]
rs7977563	0.81[ASN][1000 genomes]
rs9284166	0.81[ASN][1000 genomes]
rs9300257	0.81[ASN][1000 genomes]
rs9300259	0.80[ASN][1000 genomes]
rs9669169	0.81[ASN][1000 genomes]
rs9669273	0.98[ASN][1000 genomes]
rs9669295	0.98[ASN][1000 genomes]
rs9705407	0.94[ASN][1000 genomes]
rs9739171	0.98[ASN][1000 genomes]
rs9739565	0.81[ASN][1000 genomes]
rs9795593	0.94[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038841	chr12:123757305-124087671	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv541622	chr12:123757305-124087671	Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1035223	chr12:123795559-123991706	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv899579	chr12:123843017-123901480	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv826534	chr12:123859610-123876354	Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv3398876	chr12:123872199-123875147	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	esv3439140	chr12:123872224-123874772	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	esv3388007	chr12:123872699-123875347	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	esv3407082	chr12:123872824-123875372	Genic enhancers Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	esv3437337	chr12:123872949-123874547	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs28533432	CDK2AP1	Cis_1M	lymphoblastoid	RTeQTL
rs28533432	MPHOSPH9	Cis_1M	lymphoblastoid	RTeQTL
rs28533432	SBNO1	cis	lymphoblastoid	seeQTL
rs28533432	RP11-282O18.3	cis	Esophagus Mucosa	GTEx
rs28533432	TMEM120B	cis	parietal	SCAN
rs28533432	SBNO1	Cis_1M	lymphoblastoid	RTeQTL
rs28533432	CDK2AP1	cis	Esophagus Mucosa	GTEx
rs28533432	LOC283378	Cis_1M	lymphoblastoid	RTeQTL
rs28533432	ARL6IP4	Cis_1M	lymphoblastoid	RTeQTL
rs28533432	PITPNM2	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123872600-123873400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
2	chr12:123872800-123873400	Active TSS	Fetal Kidney	kidney
3	chr12:123872800-123873400	Active TSS	GM12878-XiMat	blood
4	chr12:123872800-123874400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:123872800-123874400	Active TSS	Fetal Brain Female	brain
6	chr12:123872800-123874800	Active TSS	Right Atrium	heart
7	chr12:123872800-123875000	Active TSS	H9 Cell Line	embryonic stem cell
8	chr12:123872800-123875000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr12:123873000-123873400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr12:123873000-123873400	Active TSS	Primary monocytes fromperipheralblood	blood
11	chr12:123873000-123873400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr12:123873000-123873400	Active TSS	Fetal Intestine Large	intestine
13	chr12:123873000-123874200	Active TSS	Thymus	Thymus
14	chr12:123873000-123874200	Active TSS	Spleen	Spleen
15	chr12:123873000-123874200	Active TSS	Monocytes-CD14+_RO01746	blood
16	chr12:123873000-123874400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr12:123873000-123874400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
18	chr12:123873000-123874400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr12:123873000-123874400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr12:123873000-123874400	Active TSS	Brain Germinal Matrix	brain
21	chr12:123873000-123874400	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr12:123873000-123874400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr12:123873000-123874400	Active TSS	Fetal Stomach	stomach
24	chr12:123873000-123874600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
25	chr12:123873000-123874600	Active TSS	Brain Angular Gyrus	brain
26	chr12:123873000-123874600	Weak transcription	Fetal Heart	heart
27	chr12:123873000-123874600	Active TSS	Psoas Muscle	Psoas
28	chr12:123873000-123874600	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr12:123873000-123874600	Active TSS	Rectal Smooth Muscle	rectum
30	chr12:123873000-123874600	Active TSS	Sigmoid Colon	Sigmoid Colon
31	chr12:123873000-123874600	Active TSS	A549	lung
32	chr12:123873000-123874600	Active TSS	HepG2	liver
33	chr12:123873000-123874800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr12:123873000-123874800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr12:123873000-123874800	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr12:123873000-123874800	Active TSS	Osteobl	bone
37	chr12:123873000-123875000	Active TSS	Brain Hippocampus Middle	brain
38	chr12:123873000-123875000	Active TSS	Gastric	stomach
39	chr12:123873000-123875000	Active TSS	Lung	lung
40	chr12:123873000-123875000	Active TSS	Small Intestine	intestine
41	chr12:123873000-123875000	Active TSS	HSMM	muscle
42	chr12:123873000-123875200	Active TSS	Left Ventricle	heart
43	chr12:123873000-123875200	Active TSS	HSMMtube	muscle
44	chr12:123873000-123875400	Active TSS	Esophagus	oesophagus
45	chr12:123873200-123873400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr12:123873200-123873400	Active TSS	Primary B cells from peripheral blood	blood
47	chr12:123873200-123873400	Active TSS	Primary T cells fromperipheralblood	blood
48	chr12:123873200-123873400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr12:123873200-123873400	Active TSS	Brain Anterior Caudate	brain
50	chr12:123873200-123873400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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