Variant report

Variant	rs10846519
Chromosome Location	chr12:123812787-123812788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:123775006..123777510-chr12:123810415..123813403,2	K562	blood:
2	chr12:123755189..123757900-chr12:123812056..123815290,3	MCF-7	breast:
3	chr12:123808333..123811091-chr12:123811876..123815023,4	K562	blood:
4	chr12:123798336..123800594-chr12:123811189..123813039,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111328	Chromatin interaction

Extended variants
information (count: 178 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs10082867	0.83[ASN][1000 genomes]
rs10444439	0.82[JPT][hapmap]
rs10732573	0.94[JPT][hapmap]
rs10734902	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10744150	0.94[JPT][hapmap]
rs10744151	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10744152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10744153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10744154	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772997	1.00[JPT][hapmap]
rs10773002	0.94[JPT][hapmap]
rs10773003	0.94[CHD][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs10773004	0.81[ASN][1000 genomes]
rs10773005	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs10773006	0.81[ASN][1000 genomes]
rs10773012	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10773013	0.90[ASN][1000 genomes]
rs10773018	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10846489	0.80[CHD][hapmap]
rs10846506	0.81[ASN][1000 genomes]
rs10846517	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10846520	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs10846523	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11057223	0.80[CHD][hapmap]
rs11057248	0.84[ASN][1000 genomes]
rs11057251	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11057254	0.83[ASN][1000 genomes]
rs11057261	0.83[ASN][1000 genomes]
rs11057273	0.83[ASN][1000 genomes]
rs11057276	0.94[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs11057283	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11057284	0.83[ASN][1000 genomes]
rs11057287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1109559	0.80[CHD][hapmap]
rs11608305	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11611141	0.83[ASN][1000 genomes]
rs11611677	0.81[ASN][1000 genomes]
rs11611694	0.83[ASN][1000 genomes]
rs11612234	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11613711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12315739	0.81[ASN][1000 genomes]
rs12317103	0.83[ASN][1000 genomes]
rs12317452	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs12366872	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs12367421	0.81[ASN][1000 genomes]
rs12582153	0.81[ASN][1000 genomes]
rs1568427	0.94[JPT][hapmap]
rs1609520	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs1660	0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1727331	0.94[JPT][hapmap]
rs2048617	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2280424	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs28410096	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs28414347	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28417583	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28418709	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28419092	0.83[ASN][1000 genomes]
rs28435460	0.82[ASN][1000 genomes]
rs28446728	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28450974	0.81[ASN][1000 genomes]
rs28461471	0.81[ASN][1000 genomes]
rs28498205	0.81[ASN][1000 genomes]
rs28501453	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28503862	0.81[ASN][1000 genomes]
rs28509440	0.83[ASN][1000 genomes]
rs28517382	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532037	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs28533432	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs28537583	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28546238	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28581850	0.81[ASN][1000 genomes]
rs28587386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28592032	0.81[ASN][1000 genomes]
rs28594416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28595660	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28602967	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28604484	0.85[ASN][1000 genomes]
rs28605269	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28611282	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28613486	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28627651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28631903	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660993	0.94[CHD][hapmap];0.84[JPT][hapmap]
rs28681105	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28703745	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28706693	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28718696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28733606	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28759130	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28786830	0.81[ASN][1000 genomes]
rs28820735	0.81[ASN][1000 genomes]
rs28825193	0.81[ASN][1000 genomes]
rs28862317	0.84[ASN][1000 genomes]
rs28865692	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28885203	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3088303	0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs35818434	0.81[ASN][1000 genomes]
rs3759111	1.00[ASW][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap]
rs3759113	0.84[JPT][hapmap];1.00[MEX][hapmap]
rs3759114	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs3803001	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3825141	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4460848	0.84[JPT][hapmap]
rs4759367	0.82[JPT][hapmap]
rs4759374	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4759375	0.81[ASN][1000 genomes]
rs4759376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4759377	0.94[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs4759407	1.00[ASW][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap]
rs4759408	1.00[CEU][hapmap]
rs4759411	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs4759413	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs4759414	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs4759421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56116847	0.82[ASN][1000 genomes]
rs57356592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57416942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58491161	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58537268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58948739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59295450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60754073	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60755632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61058270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61388686	0.83[ASN][1000 genomes]
rs61751327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416289	0.88[ASN][1000 genomes]
rs6488869	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488870	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488872	1.00[ASN][1000 genomes]
rs6488874	0.89[ASN][1000 genomes]
rs7137243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297649	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297888	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7298909	0.83[ASN][1000 genomes]
rs7301163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304782	0.94[JPT][hapmap]
rs7310756	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7312145	0.83[ASN][1000 genomes]
rs7315453	0.94[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs73216937	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73231950	0.81[ASN][1000 genomes]
rs7484644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7485967	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7486223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7486723	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7488340	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954704	0.83[ASN][1000 genomes]
rs7955367	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7959415	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7962723	0.85[ASN][1000 genomes]
rs7970080	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971557	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7972811	0.94[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs7973131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7973878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7977563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9284166	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300256	0.96[ASN][1000 genomes]
rs9300257	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300259	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9669169	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9669273	0.83[ASN][1000 genomes]
rs9669295	0.82[ASN][1000 genomes]
rs9739008	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9739171	0.83[ASN][1000 genomes]
rs9739565	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9795593	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825473	chr12:123582855-123822503	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv1803368	chr12:123640853-123822503	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	esv1830566	chr12:123640853-123822503	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	esv1836043	chr12:123709409-123822503	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
5	nsv1038841	chr12:123757305-124087671	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
6	nsv541622	chr12:123757305-124087671	Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
7	nsv1035223	chr12:123795559-123991706	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123772400-123847800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:123772800-123821000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:123773000-123835200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:123773200-123830600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:123773200-123834200	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr12:123773200-123835000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:123773200-123835000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:123773200-123838000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:123773400-123826200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr12:123773400-123826200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr12:123773400-123826600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr12:123773400-123835000	Strong transcription	Fetal Thymus	thymus
13	chr12:123773400-123835400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:123773400-123837200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr12:123773600-123816000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr12:123773600-123830800	Strong transcription	Placenta	Placenta
17	chr12:123773600-123835200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr12:123773600-123835400	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr12:123773800-123826200	Strong transcription	Adipose Nuclei	Adipose
20	chr12:123773800-123826200	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr12:123773800-123834800	Strong transcription	Duodenum Mucosa	Duodenum
22	chr12:123773800-123837200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr12:123773800-123837400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr12:123774000-123820600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr12:123774000-123821600	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr12:123774000-123835000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr12:123774000-123835200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr12:123774000-123835400	Strong transcription	Dnd41	blood
29	chr12:123774400-123821200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr12:123774600-123822200	Strong transcription	Primary B cells from peripheral blood	blood
31	chr12:123775600-123835400	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr12:123775800-123821000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr12:123776200-123826000	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr12:123776200-123830600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr12:123776400-123835000	Strong transcription	Thymus	Thymus
36	chr12:123776600-123834400	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr12:123777000-123835400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr12:123777600-123834800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr12:123778600-123816200	Strong transcription	A549	lung
40	chr12:123778800-123822600	Strong transcription	Liver	Liver
41	chr12:123779800-123814800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr12:123780000-123830600	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr12:123785200-123813200	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr12:123785600-123826200	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr12:123785600-123830800	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr12:123785600-123835000	Strong transcription	Fetal Muscle Leg	muscle
47	chr12:123786000-123816600	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr12:123786000-123825800	Strong transcription	Fetal Lung	lung
49	chr12:123789800-123816600	Strong transcription	Brain Germinal Matrix	brain
50	chr12:123790000-123815000	Weak transcription	Stomach Mucosa	stomach

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