Variant report

Variant	rs4529677
Chromosome Location	chr1:225587929-225587930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225586897..225589752-chr1:225607136..225609975,2	MCF-7	breast:
2	chr1:225581961..225584315-chr1:225585315..225587965,5	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10495240	0.80[CEU][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes]
rs10753404	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10753405	0.81[ASW][hapmap];0.84[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs10799303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10799304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10915820	0.91[AFR][1000 genomes]
rs10915822	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580119	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs12134158	0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs12141732	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1538933	0.95[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs3856155	0.95[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs3949347	0.81[ASW][hapmap];0.83[GIH][hapmap];0.88[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs5015446	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs6426069	0.92[AFR][1000 genomes]
rs6426071	0.92[AFR][1000 genomes]
rs6426073	0.94[AFR][1000 genomes]
rs6679430	0.84[LWK][hapmap];0.89[MKK][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs7539172	0.81[ASW][hapmap];0.80[CEU][hapmap];0.83[GIH][hapmap];0.88[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs947035	0.97[MKK][hapmap]
rs947036	0.94[AFR][1000 genomes]
rs947037	0.94[AFR][1000 genomes]
rs950210	0.89[MKK][hapmap];0.93[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4529677	TP53BP2	cis	parietal	SCAN
rs4529677	LEFTY1	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225568200-225595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:225570800-225600000	Weak transcription	HSMMtube	muscle
3	chr1:225575600-225588200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:225576200-225594400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:225576600-225588600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:225578000-225588600	Weak transcription	Fetal Kidney	kidney
7	chr1:225578000-225597800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:225578000-225599200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:225578400-225588200	Weak transcription	Right Ventricle	heart
10	chr1:225578600-225588200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:225580800-225599200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:225581400-225592600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr1:225581600-225596200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:225581800-225590800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr1:225582000-225597800	Weak transcription	Brain Anterior Caudate	brain
16	chr1:225582200-225588000	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr1:225582200-225588200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr1:225582200-225588200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr1:225582200-225588600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:225582200-225591600	Weak transcription	Brain Angular Gyrus	brain
21	chr1:225582200-225591800	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:225582200-225610400	Strong transcription	Fetal Thymus	thymus
23	chr1:225582400-225588600	Weak transcription	HepG2	liver
24	chr1:225582600-225588200	Weak transcription	NH-A	brain
25	chr1:225582600-225592400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:225582600-225597800	Weak transcription	Fetal Brain Male	brain
27	chr1:225583200-225588200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr1:225583200-225594000	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr1:225583200-225597800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:225583400-225588200	Weak transcription	Colonic Mucosa	Colon
31	chr1:225583400-225588800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr1:225583400-225589800	Strong transcription	Thymus	Thymus
33	chr1:225583400-225591400	Strong transcription	Stomach Smooth Muscle	stomach
34	chr1:225583400-225595400	Strong transcription	Fetal Brain Female	brain
35	chr1:225583400-225598000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr1:225583400-225601600	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr1:225583400-225601600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr1:225583400-225601800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr1:225583600-225588600	Weak transcription	Brain Substantia Nigra	brain
40	chr1:225583600-225597800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr1:225583600-225602200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr1:225583800-225588200	Weak transcription	Aorta	Aorta
43	chr1:225583800-225588200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr1:225583800-225588800	Weak transcription	Small Intestine	intestine
45	chr1:225583800-225589600	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr1:225583800-225597800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr1:225583800-225601600	Strong transcription	Primary B cells from cord blood	blood
48	chr1:225584000-225588400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr1:225584000-225603800	Weak transcription	Psoas Muscle	Psoas
50	chr1:225584200-225588200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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