Variant report

Variant	rs6679430
Chromosome Location	chr1:225576058-225576059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225574120..225577157-chr1:225578025..225581400,4	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10495240	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10753404	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10753405	0.93[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.88[LWK][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10799301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10799303	0.80[AFR][1000 genomes]
rs10799304	0.80[AFR][1000 genomes]
rs10915817	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10915820	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11578124	0.82[AMR][1000 genomes]
rs11580119	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12028429	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12073561	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12134158	0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1538933	0.87[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2282379	0.95[CEU][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2406109	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3856154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3856155	0.87[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3949347	0.93[ASW][hapmap];0.86[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.83[LWK][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4529677	0.80[AFR][1000 genomes]
rs5015446	0.86[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6426069	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6426071	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6426073	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7539172	0.93[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.83[JPT][hapmap];0.84[LWK][hapmap];0.91[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7550037	0.81[CEU][hapmap]
rs947035	0.80[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs947036	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs947037	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs950210	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6679430	C1orf95	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225564400-225577600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:225567000-225583400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:225567000-225585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:225567200-225577600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:225567200-225585000	Weak transcription	NHEK	skin
6	chr1:225568200-225583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:225568200-225585000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:225568200-225595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:225569400-225585000	Weak transcription	Pancreas	Pancrea
10	chr1:225570400-225587600	Weak transcription	Spleen	Spleen
11	chr1:225570800-225600000	Weak transcription	HSMMtube	muscle
12	chr1:225571400-225583400	Weak transcription	Aorta	Aorta
13	chr1:225571400-225585000	Weak transcription	Gastric	stomach
14	chr1:225574600-225577800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:225574800-225584000	Weak transcription	Primary T cells from cord blood	blood
16	chr1:225575400-225577800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:225575600-225588200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:225575800-225576200	Enhancers	Osteobl	bone
19	chr1:225575800-225576400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:225576000-225576200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:225576000-225576200	Enhancers	Thymus	Thymus
22	chr1:225576000-225576400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:225576000-225576400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr1:225576000-225576600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:225576000-225583600	Weak transcription	Primary hematopoietic stem cells	blood

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