Variant report

Variant	rs10799301
Chromosome Location	chr1:225567257-225567258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225566238..225568562-chr1:225591182..225593090,2	K562	blood:

Variant related genes	Relation type
ENSG00000143815	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10495240	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10753404	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10753405	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10915817	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10915820	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11578124	0.82[AMR][1000 genomes]
rs11580119	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12028429	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073561	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12134158	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1538933	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2282379	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2406109	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856154	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856155	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3949347	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs5015446	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6426069	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6426071	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6426072	0.80[ASN][1000 genomes]
rs6426073	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6679430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7539172	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs947035	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs947036	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs947037	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs950210	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225564400-225577600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:225565800-225568000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:225565800-225568200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:225565800-225568200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:225566000-225567400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:225566000-225567800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:225566000-225568200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:225566400-225567600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:225566800-225567600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:225566800-225567600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:225566800-225568000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:225566800-225568200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr1:225567000-225567800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:225567000-225583400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:225567000-225585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:225567200-225577600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:225567200-225585000	Weak transcription	NHEK	skin

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