The 2.0 version of rSNPBase

Variant report

Variant rs12134158
Chromosome Location chr1:225577648-225577649
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:225567000-225583400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
2 chr1:225567000-225585000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:225567200-225585000 Weak transcription NHEK skin
4 chr1:225568200-225583200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr1:225568200-225585000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr1:225568200-225595800 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr1:225569400-225585000 Weak transcription Pancreas Pancrea
8 chr1:225570400-225587600 Weak transcription Spleen Spleen
9 chr1:225570800-225600000 Weak transcription HSMMtube muscle
10 chr1:225571400-225583400 Weak transcription Aorta Aorta
11 chr1:225571400-225585000 Weak transcription Gastric stomach
12 chr1:225574600-225577800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr1:225574800-225584000 Weak transcription Primary T cells from cord blood blood
14 chr1:225575400-225577800 Weak transcription Stomach Smooth Muscle stomach
15 chr1:225575600-225588200 Weak transcription iPS-20b Cell Line embryonic stem cell
16 chr1:225576000-225583600 Weak transcription Primary hematopoietic stem cells blood
17 chr1:225576200-225577800 Weak transcription Fetal Brain Female brain
18 chr1:225576200-225583800 Weak transcription Primary B cells from cord blood blood
19 chr1:225576200-225585000 Weak transcription Fetal Stomach stomach
20 chr1:225576200-225585200 Weak transcription Osteobl bone
21 chr1:225576200-225594400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
22 chr1:225576400-225583400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr1:225576400-225583600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr1:225576400-225585000 Weak transcription Primary hematopoietic stem cells short term culture blood
25 chr1:225576400-225586000 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr1:225576400-225586000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr1:225576600-225582200 Weak transcription Primary neutrophils fromperipheralblood blood
28 chr1:225576600-225588600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr1:225576800-225583800 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:225576800-225585000 Weak transcription Lung lung
31 chr1:225577200-225578200 Enhancers Fetal Thymus thymus
32 chr1:225577400-225578200 Enhancers Thymus Thymus
33 chr1:225577600-225577800 Enhancers Primary T helper 17 cells PMA-I stimulated --
34 chr1:225577600-225577800 Enhancers Primary T helper cells fromperipheralblood blood
35 chr1:225577600-225577800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr1:225577600-225577800 Enhancers Esophagus oesophagus
37 chr1:225577600-225578000 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
38 chr1:225577600-225578200 Strong transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015