Variant report

Variant	rs3949347
Chromosome Location	chr1:225582816-225582817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225581961..225584315-chr1:225585315..225587965,5	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10495240	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10495241	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs10753404	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10753405	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10799301	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10799303	0.94[AFR][1000 genomes]
rs10799304	0.94[AFR][1000 genomes]
rs10799307	0.82[AMR][1000 genomes]
rs10915817	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10915820	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10915822	0.89[AFR][1000 genomes]
rs10915823	0.84[AMR][1000 genomes]
rs11578981	0.82[CEU][hapmap]
rs11580119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12028429	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12073561	0.80[AMR][1000 genomes]
rs12134158	0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12729445	0.81[CEU][hapmap]
rs12737248	0.82[CEU][hapmap]
rs12756111	0.82[CEU][hapmap]
rs1538930	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs1538933	0.93[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2282379	0.82[CEU][hapmap];0.86[GIH][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap]
rs2406109	0.89[ASN][1000 genomes]
rs3766928	0.82[ASW][hapmap];0.82[CEU][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes]
rs3856154	0.86[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];0.86[TSI][hapmap];0.89[ASN][1000 genomes]
rs3856155	0.93[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4529677	0.94[AFR][1000 genomes]
rs5015446	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6426069	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6426071	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6426072	0.87[ASN][1000 genomes]
rs6426073	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6679430	0.93[ASW][hapmap];0.86[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.83[LWK][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7539172	1.00[ASW][hapmap];0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs947035	0.87[ASW][hapmap];0.82[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs947036	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947037	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950210	0.87[ASW][hapmap];0.86[CEU][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225567000-225583400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:225567000-225585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:225567200-225585000	Weak transcription	NHEK	skin
4	chr1:225568200-225583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:225568200-225585000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:225568200-225595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:225569400-225585000	Weak transcription	Pancreas	Pancrea
8	chr1:225570400-225587600	Weak transcription	Spleen	Spleen
9	chr1:225570800-225600000	Weak transcription	HSMMtube	muscle
10	chr1:225571400-225583400	Weak transcription	Aorta	Aorta
11	chr1:225571400-225585000	Weak transcription	Gastric	stomach
12	chr1:225574800-225584000	Weak transcription	Primary T cells from cord blood	blood
13	chr1:225575600-225588200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:225576000-225583600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr1:225576200-225583800	Weak transcription	Primary B cells from cord blood	blood
16	chr1:225576200-225585000	Weak transcription	Fetal Stomach	stomach
17	chr1:225576200-225585200	Weak transcription	Osteobl	bone
18	chr1:225576200-225594400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:225576400-225583400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:225576400-225583600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:225576400-225585000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr1:225576400-225586000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr1:225576400-225586000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:225576600-225588600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:225576800-225583800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr1:225576800-225585000	Weak transcription	Lung	lung
27	chr1:225577800-225583400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr1:225577800-225585000	Weak transcription	Esophagus	oesophagus
29	chr1:225577800-225585200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr1:225578000-225583400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr1:225578000-225585000	Weak transcription	Adipose Nuclei	Adipose
32	chr1:225578000-225588600	Weak transcription	Fetal Kidney	kidney
33	chr1:225578000-225597800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:225578000-225599200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr1:225578200-225583400	Weak transcription	Thymus	Thymus
36	chr1:225578200-225584800	Weak transcription	Fetal Intestine Small	intestine
37	chr1:225578400-225588200	Weak transcription	Right Ventricle	heart
38	chr1:225578600-225588200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr1:225578800-225583400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:225579200-225583200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr1:225579800-225583400	Weak transcription	Colon Smooth Muscle	Colon
42	chr1:225579800-225585000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:225580200-225583400	Weak transcription	Fetal Brain Female	brain
44	chr1:225580200-225583400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr1:225580800-225585000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr1:225580800-225599200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr1:225581000-225585000	Weak transcription	Left Ventricle	heart
48	chr1:225581000-225585200	Weak transcription	Liver	Liver
49	chr1:225581200-225585000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:225581400-225583400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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