Variant report

Variant	rs4802216
Chromosome Location	chr19:44741523-44741524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44732822..44734810-chr19:44741387..44743469,2	K562	blood:
2	chr19:44739640..44742432-chr19:44813683..44816580,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1233428	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1233441	0.88[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1233444	0.87[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233447	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233448	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233459	0.89[CEU][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233466	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233467	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233468	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1233470	0.89[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1582	0.84[CEU][hapmap]
rs2571101	0.84[CEU][hapmap]
rs2571102	0.84[CEU][hapmap]
rs2609874	0.88[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2609875	0.88[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2609877	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2609908	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2722714	0.82[ASN][1000 genomes]
rs2722720	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2722751	0.89[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44742000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr19:44730000-44743600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:44730000-44745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
6	chr19:44730200-44743000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr19:44730200-44743400	ZNF genes & repeats	Fetal Lung	lung
8	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr19:44730400-44743400	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr19:44731000-44742000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr19:44731000-44744400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr19:44731400-44742000	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr19:44731800-44744200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr19:44733800-44744200	ZNF genes & repeats	A549	lung
15	chr19:44735600-44742200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr19:44737000-44741800	ZNF genes & repeats	Fetal Stomach	stomach
17	chr19:44737600-44744400	ZNF genes & repeats	Fetal Brain Female	brain
18	chr19:44738000-44742000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr19:44738000-44742600	ZNF genes & repeats	Brain Hippocampus Middle	brain
20	chr19:44738000-44742600	ZNF genes & repeats	Psoas Muscle	Psoas
21	chr19:44740000-44741800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr19:44740000-44746400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr19:44740200-44741800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr19:44740200-44742000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr19:44740200-44750800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr19:44740200-44752200	Weak transcription	Hela-S3	cervix
27	chr19:44741000-44741600	Weak transcription	Right Ventricle	heart
28	chr19:44741000-44742000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr19:44741000-44742400	Weak transcription	Pancreas	Pancrea
30	chr19:44741000-44742600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr19:44741000-44742600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr19:44741000-44742600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr19:44741000-44743200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr19:44741000-44743400	Weak transcription	Thymus	Thymus
35	chr19:44741000-44744000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr19:44741000-44745000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr19:44741000-44745600	Weak transcription	Brain Angular Gyrus	brain
38	chr19:44741000-44752600	Weak transcription	NHDF-Ad	bronchial
39	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr19:44741200-44741800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr19:44741200-44741800	Weak transcription	Fetal Heart	heart
42	chr19:44741200-44742000	Strong transcription	Primary B cells from cord blood	blood
43	chr19:44741200-44742400	Weak transcription	Fetal Thymus	thymus
44	chr19:44741200-44742600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr19:44741200-44742800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr19:44741200-44742800	Weak transcription	HepG2	liver
47	chr19:44741200-44742800	Weak transcription	NHEK	skin
48	chr19:44741200-44743000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr19:44741200-44743000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr19:44741200-44743000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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