Variant report

Variant	rs1233468
Chromosome Location	chr19:44751397-44751398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44749316..44752079-chr19:44759664..44762273,2	K562	blood:
2	chr19:44751203..44753045-chr19:44757395..44759425,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF235-1	chr19:44751193-44752527	NONHSAT066684

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1233428	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1233441	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1233444	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233447	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233448	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233459	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233466	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233467	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233470	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12974099	0.87[ASN][1000 genomes]
rs1434574	0.83[ASN][1000 genomes]
rs1582	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1808735	0.84[ASN][1000 genomes]
rs1821458	0.84[ASN][1000 genomes]
rs1821459	0.84[ASN][1000 genomes]
rs2571062	0.82[ASN][1000 genomes]
rs2571099	0.82[ASN][1000 genomes]
rs2571101	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2571102	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2571104	0.84[ASN][1000 genomes]
rs2609874	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2609875	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2609877	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2609880	0.84[ASN][1000 genomes]
rs2609894	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2609895	0.87[ASN][1000 genomes]
rs2609896	0.87[ASN][1000 genomes]
rs2609897	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2609908	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2722714	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2722720	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2722722	0.84[ASN][1000 genomes]
rs2722723	0.84[ASN][1000 genomes]
rs2722725	0.84[ASN][1000 genomes]
rs2722726	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2722727	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2722731	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2722737	0.82[ASN][1000 genomes]
rs2722751	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4280359	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4325673	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4640292	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4802216	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7249559	0.87[ASN][1000 genomes]
rs892595	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
3	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44740200-44752200	Weak transcription	Hela-S3	cervix
5	chr19:44741000-44752600	Weak transcription	NHDF-Ad	bronchial
6	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr19:44741400-44751800	Weak transcription	HSMM	muscle
8	chr19:44742000-44763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr19:44746200-44756000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr19:44749600-44754600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr19:44750200-44751400	Weak transcription	Left Ventricle	heart
12	chr19:44750200-44751600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr19:44750800-44751800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr19:44750800-44754400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr19:44751000-44751800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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