Variant report

Variant	rs1233428
Chromosome Location	chr19:44778405-44778406
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44764212..44765954-chr19:44776988..44779803,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1233441	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233444	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233447	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233448	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233459	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233466	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233467	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233468	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1233470	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12974099	0.94[ASN][1000 genomes]
rs1434574	0.90[ASN][1000 genomes]
rs1582	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1808735	0.91[ASN][1000 genomes]
rs1821458	0.91[ASN][1000 genomes]
rs1821459	0.91[ASN][1000 genomes]
rs2571062	0.89[ASN][1000 genomes]
rs2571065	0.82[AMR][1000 genomes]
rs2571099	0.89[ASN][1000 genomes]
rs2571101	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2571102	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2571104	0.91[ASN][1000 genomes]
rs2609874	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2609875	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609877	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609880	0.91[ASN][1000 genomes]
rs2609894	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2609895	0.94[ASN][1000 genomes]
rs2609896	0.94[ASN][1000 genomes]
rs2609897	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2609908	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2722714	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2722720	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2722722	0.91[ASN][1000 genomes]
rs2722723	0.91[ASN][1000 genomes]
rs2722725	0.91[ASN][1000 genomes]
rs2722726	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2722727	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2722731	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2722737	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2722751	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4280359	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4325673	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4640292	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4802216	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7249559	0.94[ASN][1000 genomes]
rs892595	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44764800-44782000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr19:44770000-44780800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:44775000-44791200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr19:44776800-44779400	ZNF genes & repeats	Primary T cells from cord blood	blood
5	chr19:44776800-44784000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:44777000-44778800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr19:44777000-44778800	ZNF genes & repeats	Colon Smooth Muscle	Colon
8	chr19:44777000-44779000	ZNF genes & repeats	Fetal Lung	lung
9	chr19:44777000-44779200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr19:44777000-44781000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
12	chr19:44777200-44778600	Strong transcription	Fetal Muscle Trunk	muscle
13	chr19:44777200-44778800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr19:44777200-44778800	ZNF genes & repeats	Brain Germinal Matrix	brain
15	chr19:44777200-44778800	ZNF genes & repeats	Brain Hippocampus Middle	brain
16	chr19:44777200-44778800	ZNF genes & repeats	Fetal Muscle Leg	muscle
17	chr19:44777200-44778800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
18	chr19:44777200-44779200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
19	chr19:44777200-44780800	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr19:44777400-44778600	ZNF genes & repeats	Spleen	Spleen
21	chr19:44777400-44778800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
22	chr19:44777400-44778800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr19:44777400-44778800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr19:44777400-44778800	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr19:44777400-44778800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
26	chr19:44777400-44778800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
27	chr19:44777400-44778800	ZNF genes & repeats	Lung	lung
28	chr19:44777400-44778800	ZNF genes & repeats	Psoas Muscle	Psoas
29	chr19:44777400-44779000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr19:44777400-44779000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
31	chr19:44777400-44779200	ZNF genes & repeats	Fetal Brain Female	brain
32	chr19:44777400-44779400	ZNF genes & repeats	A549	lung
33	chr19:44777400-44779600	ZNF genes & repeats	Primary B cells from cord blood	blood
34	chr19:44777400-44779800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
35	chr19:44777400-44780600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
36	chr19:44777400-44782400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr19:44777600-44778600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
38	chr19:44777600-44778600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr19:44777600-44778600	ZNF genes & repeats	Pancreas	Pancrea
40	chr19:44777600-44778600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
41	chr19:44777600-44778800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr19:44777600-44778800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr19:44777600-44778800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
44	chr19:44777600-44778800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr19:44777600-44778800	ZNF genes & repeats	Left Ventricle	heart
46	chr19:44777600-44778800	ZNF genes & repeats	Ovary	ovary
47	chr19:44777600-44778800	ZNF genes & repeats	Right Ventricle	heart
48	chr19:44777600-44778800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
49	chr19:44777600-44779000	Strong transcription	Dnd41	blood
50	chr19:44777600-44779200	ZNF genes & repeats	Aorta	Aorta

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