Variant report

Variant	rs2609875
Chromosome Location	chr19:44798268-44798269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44791055..44792864-chr19:44796780..44798588,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1233428	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233444	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233447	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233448	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233459	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233466	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233467	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233468	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233470	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12974099	0.95[ASN][1000 genomes]
rs1434574	0.91[ASN][1000 genomes]
rs1582	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1808735	0.92[ASN][1000 genomes]
rs1821458	0.92[ASN][1000 genomes]
rs1821459	0.92[ASN][1000 genomes]
rs2571062	0.90[ASN][1000 genomes]
rs2571065	0.82[AMR][1000 genomes]
rs2571099	0.90[ASN][1000 genomes]
rs2571101	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.88[MKK][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2571102	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.91[MKK][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2571104	0.94[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2609874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609877	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609880	0.92[ASN][1000 genomes]
rs2609894	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2609895	0.95[ASN][1000 genomes]
rs2609896	0.95[ASN][1000 genomes]
rs2609897	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609908	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2722714	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2722720	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2722722	0.92[ASN][1000 genomes]
rs2722723	0.92[ASN][1000 genomes]
rs2722725	0.92[ASN][1000 genomes]
rs2722726	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2722727	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2722731	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2722737	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2722740	0.83[CEU][hapmap]
rs2722751	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4280359	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4325673	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4640292	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4802216	0.88[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7249559	0.95[ASN][1000 genomes]
rs892595	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2609875	DMPK	cis	parietal	SCAN
rs2609875	ZNF233	Cis_1M	lymphoblastoid	RTeQTL
rs2609875	FPR3	cis	cerebellum	SCAN

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
2	chr19:44781800-44801400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:44783200-44804400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:44785200-44801600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44788000-44799800	Weak transcription	HepG2	liver
6	chr19:44788200-44801600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
7	chr19:44790000-44801600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
8	chr19:44790400-44806800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr19:44790400-44808400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr19:44790600-44801200	Weak transcription	NHLF	lung
11	chr19:44790800-44798400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:44791000-44799600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr19:44791000-44800200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
14	chr19:44791200-44798800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
15	chr19:44791200-44801600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr19:44791200-44801600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
17	chr19:44791200-44802200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
18	chr19:44791200-44806800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr19:44791400-44799200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
20	chr19:44791400-44802200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
21	chr19:44791400-44802800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
22	chr19:44791400-44804600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr19:44792400-44807600	Weak transcription	HUVEC	blood vessel
24	chr19:44792800-44801200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr19:44792800-44807600	Weak transcription	NH-A	brain
26	chr19:44792800-44808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr19:44793000-44801200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr19:44793200-44801200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr19:44793400-44799800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:44793600-44800200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr19:44793800-44801000	Weak transcription	Osteobl	bone
32	chr19:44794000-44799000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr19:44794200-44800200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr19:44794400-44799600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr19:44794400-44799800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr19:44794400-44801200	Weak transcription	Stomach Mucosa	stomach
37	chr19:44794400-44806400	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr19:44794400-44806800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr19:44794600-44801200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr19:44794600-44802800	Weak transcription	NHDF-Ad	bronchial
41	chr19:44794600-44807600	Strong transcription	Primary B cells from cord blood	blood
42	chr19:44794800-44799600	Weak transcription	Placenta	Placenta
43	chr19:44794800-44801200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr19:44794800-44801200	Weak transcription	Right Ventricle	heart
45	chr19:44794800-44801200	Weak transcription	HSMMtube	muscle
46	chr19:44794800-44803600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr19:44795000-44798400	Weak transcription	Left Ventricle	heart
48	chr19:44795000-44800000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr19:44795000-44801200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr19:44795000-44801200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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