Variant report

Variant	rs2609908
Chromosome Location	chr19:44792969-44792970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44788129..44789786-chr19:44790897..44793362,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1233428	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233441	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233444	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233447	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233448	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233459	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233466	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233467	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233468	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233470	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12974099	0.95[ASN][1000 genomes]
rs1434574	0.91[ASN][1000 genomes]
rs1582	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1808735	0.92[ASN][1000 genomes]
rs1821458	0.92[ASN][1000 genomes]
rs1821459	0.92[ASN][1000 genomes]
rs2571062	0.90[ASN][1000 genomes]
rs2571065	0.80[AMR][1000 genomes]
rs2571099	0.90[ASN][1000 genomes]
rs2571101	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2571102	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2571104	0.92[ASN][1000 genomes]
rs2609874	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609875	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609880	0.92[ASN][1000 genomes]
rs2609894	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2609895	0.95[ASN][1000 genomes]
rs2609896	0.95[ASN][1000 genomes]
rs2609897	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2722714	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2722720	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2722722	0.92[ASN][1000 genomes]
rs2722723	0.92[ASN][1000 genomes]
rs2722725	0.92[ASN][1000 genomes]
rs2722726	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2722727	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2722731	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2722737	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2722751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4280359	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4325673	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4640292	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4802216	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7249559	0.95[ASN][1000 genomes]
rs892595	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2609908	ZNF233	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
2	chr19:44781800-44801400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:44783200-44804400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:44785200-44801600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44788000-44799800	Weak transcription	HepG2	liver
6	chr19:44788200-44801600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
7	chr19:44788800-44795400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
8	chr19:44790000-44793800	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr19:44790000-44795200	ZNF genes & repeats	Fetal Muscle Leg	muscle
10	chr19:44790000-44801600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
11	chr19:44790400-44794800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr19:44790400-44806800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr19:44790400-44808400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr19:44790600-44795400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
15	chr19:44790600-44801200	Weak transcription	NHLF	lung
16	chr19:44790800-44793600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr19:44790800-44795000	ZNF genes & repeats	Colon Smooth Muscle	Colon
18	chr19:44790800-44797400	ZNF genes & repeats	Fetal Lung	lung
19	chr19:44790800-44798400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:44791000-44794000	Strong transcription	Brain Anterior Caudate	brain
21	chr19:44791000-44794400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr19:44791000-44794400	ZNF genes & repeats	Brain Germinal Matrix	brain
23	chr19:44791000-44794600	ZNF genes & repeats	Primary B cells from cord blood	blood
24	chr19:44791000-44794800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr19:44791000-44795000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr19:44791000-44795000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
27	chr19:44791000-44795000	ZNF genes & repeats	Left Ventricle	heart
28	chr19:44791000-44795400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
29	chr19:44791000-44795400	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr19:44791000-44795400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr19:44791000-44799600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr19:44791000-44800200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
33	chr19:44791200-44793200	ZNF genes & repeats	A549	lung
34	chr19:44791200-44793400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
35	chr19:44791200-44793400	ZNF genes & repeats	Psoas Muscle	Psoas
36	chr19:44791200-44793600	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr19:44791200-44793800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
38	chr19:44791200-44794200	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr19:44791200-44794600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr19:44791200-44794600	ZNF genes & repeats	Primary T cells from cord blood	blood
41	chr19:44791200-44794800	Strong transcription	Placenta	Placenta
42	chr19:44791200-44794800	Strong transcription	Right Ventricle	heart
43	chr19:44791200-44795000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
44	chr19:44791200-44795000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr19:44791200-44795000	ZNF genes & repeats	Aorta	Aorta
46	chr19:44791200-44795000	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr19:44791200-44795200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
48	chr19:44791200-44795400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
49	chr19:44791200-44795400	ZNF genes & repeats	Colonic Mucosa	Colon
50	chr19:44791200-44795400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon

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