Variant report

Variant	rs1233467
Chromosome Location	chr19:44752855-44752856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44751203..44753045-chr19:44757395..44759425,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1233428	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233441	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233444	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233447	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233448	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233468	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233470	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12974099	0.88[ASN][1000 genomes]
rs1434574	0.85[ASN][1000 genomes]
rs1582	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1808735	0.86[ASN][1000 genomes]
rs1821458	0.86[ASN][1000 genomes]
rs1821459	0.86[ASN][1000 genomes]
rs2571062	0.84[ASN][1000 genomes]
rs2571099	0.84[ASN][1000 genomes]
rs2571101	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2571102	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2571104	0.86[ASN][1000 genomes]
rs2609874	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2609875	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2609877	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2609880	0.86[ASN][1000 genomes]
rs2609894	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2609895	0.88[ASN][1000 genomes]
rs2609896	0.88[ASN][1000 genomes]
rs2609897	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2609908	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2722714	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2722720	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2722722	0.86[ASN][1000 genomes]
rs2722723	0.86[ASN][1000 genomes]
rs2722725	0.86[ASN][1000 genomes]
rs2722726	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2722727	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2722731	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2722737	0.84[ASN][1000 genomes]
rs2722751	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4280359	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4325673	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4640292	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4802216	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7249559	0.88[ASN][1000 genomes]
rs892595	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
3	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr19:44742000-44763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr19:44746200-44756000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:44749600-44754600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:44750800-44754400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr19:44751400-44753200	ZNF genes & repeats	Ovary	ovary
10	chr19:44751400-44756200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr19:44751600-44754200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
12	chr19:44751800-44753000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr19:44751800-44753200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr19:44752200-44753000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr19:44752200-44753200	ZNF genes & repeats	Aorta	Aorta
16	chr19:44752200-44754000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
17	chr19:44752200-44754000	ZNF genes & repeats	Colon Smooth Muscle	Colon
18	chr19:44752400-44753200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
19	chr19:44752400-44753800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr19:44752400-44754200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr19:44752800-44753200	ZNF genes & repeats	Left Ventricle	heart
22	chr19:44752800-44753600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr19:44752800-44754000	ZNF genes & repeats	Fetal Lung	lung
24	chr19:44752800-44754200	ZNF genes & repeats	A549	lung

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