Variant report

Variant	rs2609896
Chromosome Location	chr19:44827263-44827264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1233428	0.94[ASN][1000 genomes]
rs1233441	0.94[ASN][1000 genomes]
rs1233444	0.88[ASN][1000 genomes]
rs1233447	0.88[ASN][1000 genomes]
rs1233448	0.88[ASN][1000 genomes]
rs1233459	0.88[ASN][1000 genomes]
rs1233466	0.88[ASN][1000 genomes]
rs1233467	0.88[ASN][1000 genomes]
rs1233468	0.87[ASN][1000 genomes]
rs1233470	0.89[ASN][1000 genomes]
rs12974099	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1434574	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1582	0.97[ASN][1000 genomes]
rs1808735	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1821458	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1821459	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2571062	0.94[ASN][1000 genomes]
rs2571099	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2571101	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2571102	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2571104	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2609874	0.94[ASN][1000 genomes]
rs2609875	0.95[ASN][1000 genomes]
rs2609877	0.95[ASN][1000 genomes]
rs2609880	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2609894	0.99[ASN][1000 genomes]
rs2609895	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609897	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2609908	0.95[ASN][1000 genomes]
rs2722714	0.96[ASN][1000 genomes]
rs2722720	0.96[ASN][1000 genomes]
rs2722722	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2722723	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2722725	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2722726	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2722727	0.97[ASN][1000 genomes]
rs2722731	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2722737	0.94[ASN][1000 genomes]
rs2722751	0.95[ASN][1000 genomes]
rs4280359	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4325673	0.97[ASN][1000 genomes]
rs4640292	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7249559	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892595	0.97[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver
2	chr19:44824800-44829400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:44824800-44841000	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:44825000-44846600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44825200-44828800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr19:44825800-44831800	Weak transcription	Right Ventricle	heart
7	chr19:44826600-44827400	ZNF genes & repeats	Aorta	Aorta
8	chr19:44826600-44827400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
9	chr19:44826800-44827400	ZNF genes & repeats	Brain Anterior Caudate	brain
10	chr19:44827000-44827400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:44827000-44827400	ZNF genes & repeats	Brain Angular Gyrus	brain
12	chr19:44827000-44827400	ZNF genes & repeats	Left Ventricle	heart
13	chr19:44827200-44827400	Enhancers	HSMMtube	muscle
14	chr19:44827200-44828400	Weak transcription	Fetal Brain Male	brain
15	chr19:44827200-44828800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr19:44827200-44828800	Weak transcription	Pancreas	Pancrea

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