Variant report

Variant	rs4640292
Chromosome Location	chr19:44824384-44824385
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1233428	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233441	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233444	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233447	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233448	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233459	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233466	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233467	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233468	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1233470	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12974099	1.00[ASN][1000 genomes]
rs1434574	0.95[ASN][1000 genomes]
rs1582	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1808735	0.97[ASN][1000 genomes]
rs1821458	0.97[ASN][1000 genomes]
rs1821459	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2571062	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2571065	0.84[AMR][1000 genomes]
rs2571099	0.94[ASN][1000 genomes]
rs2571101	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2571102	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2571104	0.97[ASN][1000 genomes]
rs2609874	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2609875	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609877	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609880	0.97[ASN][1000 genomes]
rs2609894	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609895	1.00[ASN][1000 genomes]
rs2609896	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2609897	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609908	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2722714	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2722720	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2722722	0.97[ASN][1000 genomes]
rs2722723	0.97[ASN][1000 genomes]
rs2722725	0.97[ASN][1000 genomes]
rs2722726	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2722727	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2722731	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2722737	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2722751	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4280359	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4325673	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7249559	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs892595	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4640292	ZNF233	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44814600-44824600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver

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