Variant report

Variant	rs4808273
Chromosome Location	chr19:21181660-21181661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10164375	0.91[EUR][1000 genomes]
rs10410901	0.91[EUR][1000 genomes]
rs10412688	0.82[ASN][1000 genomes]
rs10413692	0.82[ASN][1000 genomes]
rs10417165	0.83[ASN][1000 genomes]
rs10418706	0.87[ASN][1000 genomes]
rs10421392	0.91[EUR][1000 genomes]
rs10421819	0.91[EUR][1000 genomes]
rs11085424	0.83[ASN][1000 genomes]
rs11666640	0.91[EUR][1000 genomes]
rs11671894	0.83[ASN][1000 genomes]
rs11878599	0.88[EUR][1000 genomes]
rs12104387	0.89[ASN][1000 genomes]
rs12608931	0.82[ASN][1000 genomes]
rs12609510	0.83[ASN][1000 genomes]
rs12609831	0.83[ASN][1000 genomes]
rs12611115	0.82[ASN][1000 genomes]
rs12973921	0.89[EUR][1000 genomes]
rs12975789	0.83[ASN][1000 genomes]
rs12976796	0.87[ASN][1000 genomes]
rs1470021	0.91[EUR][1000 genomes]
rs1470022	0.89[EUR][1000 genomes]
rs1609441	0.91[EUR][1000 genomes]
rs2013048	0.91[EUR][1000 genomes]
rs2081050	0.82[ASN][1000 genomes]
rs2081054	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2081055	0.82[ASN][1000 genomes]
rs2081056	0.82[ASN][1000 genomes]
rs2081057	0.89[ASN][1000 genomes]
rs2098681	0.85[ASN][1000 genomes]
rs2099648	0.87[ASN][1000 genomes]
rs2112803	0.82[ASN][1000 genomes]
rs2164988	0.91[EUR][1000 genomes]
rs2358792	0.85[ASN][1000 genomes]
rs2358795	0.83[ASN][1000 genomes]
rs2884548	0.89[ASN][1000 genomes]
rs4255903	0.89[ASN][1000 genomes]
rs4292035	0.86[ASN][1000 genomes]
rs4365405	0.82[ASN][1000 genomes]
rs62122564	0.82[ASN][1000 genomes]
rs62122565	0.82[ASN][1000 genomes]
rs6511175	0.82[ASN][1000 genomes]
rs6511179	0.81[ASN][1000 genomes]
rs6511181	0.82[ASN][1000 genomes]
rs6511195	0.91[EUR][1000 genomes]
rs6511198	0.91[EUR][1000 genomes]
rs6511200	0.91[EUR][1000 genomes]
rs7247413	0.83[ASN][1000 genomes]
rs7247553	0.87[ASN][1000 genomes]
rs7248087	0.85[ASN][1000 genomes]
rs7252277	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7253530	0.83[ASN][1000 genomes]
rs7254722	0.86[ASN][1000 genomes]
rs7254768	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7258477	0.89[ASN][1000 genomes]
rs7259653	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8102966	0.89[ASN][1000 genomes]
rs8103696	0.83[ASN][1000 genomes]
rs8106801	0.91[EUR][1000 genomes]
rs9941463	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1850387	chr19:21109758-21294264	Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21177400-21182600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr19:21180400-21182200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr19:21180600-21182400	Enhancers	Dnd41	blood
4	chr19:21181400-21182800	Weak transcription	Spleen	Spleen

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