Variant report

Variant	rs62122565
Chromosome Location	chr19:21179270-21179271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10401931	0.86[EUR][1000 genomes]
rs10409844	0.86[EUR][1000 genomes]
rs10412688	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10413175	0.86[EUR][1000 genomes]
rs10413692	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10417165	0.87[ASN][1000 genomes]
rs10418706	0.91[ASN][1000 genomes]
rs10422193	0.83[ASN][1000 genomes]
rs11085424	0.87[ASN][1000 genomes]
rs11085431	0.85[EUR][1000 genomes]
rs11666869	0.85[EUR][1000 genomes]
rs11668335	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11669248	0.83[EUR][1000 genomes]
rs11670162	0.86[EUR][1000 genomes]
rs11671894	0.87[ASN][1000 genomes]
rs11672142	0.84[EUR][1000 genomes]
rs12104387	0.93[ASN][1000 genomes]
rs12608706	0.81[EUR][1000 genomes]
rs12608931	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12609167	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12609427	0.85[EUR][1000 genomes]
rs12609510	0.87[ASN][1000 genomes]
rs12609831	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12611115	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12973640	0.86[EUR][1000 genomes]
rs12975789	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12976796	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12981855	0.86[EUR][1000 genomes]
rs1968523	0.86[EUR][1000 genomes]
rs1971054	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2081050	0.85[ASN][1000 genomes]
rs2081052	0.80[ASN][1000 genomes]
rs2081054	0.93[ASN][1000 genomes]
rs2081055	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081056	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081057	0.93[ASN][1000 genomes]
rs2098681	0.88[ASN][1000 genomes]
rs2099648	0.91[ASN][1000 genomes]
rs2112803	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164989	0.86[EUR][1000 genomes]
rs2358792	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2358795	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2884548	0.93[ASN][1000 genomes]
rs2884554	0.85[EUR][1000 genomes]
rs4255903	0.93[ASN][1000 genomes]
rs4292035	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4365405	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4808273	0.82[ASN][1000 genomes]
rs4809119	0.86[EUR][1000 genomes]
rs62122564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6511175	0.83[ASN][1000 genomes]
rs6511179	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6511181	0.85[ASN][1000 genomes]
rs6511186	0.86[EUR][1000 genomes]
rs6511187	0.82[EUR][1000 genomes]
rs6511188	0.86[EUR][1000 genomes]
rs6511191	0.85[EUR][1000 genomes]
rs7247413	0.87[ASN][1000 genomes]
rs7247553	0.91[ASN][1000 genomes]
rs7248087	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7249283	0.86[EUR][1000 genomes]
rs7249736	0.86[EUR][1000 genomes]
rs7252277	0.87[ASN][1000 genomes]
rs7253530	0.87[ASN][1000 genomes]
rs7254722	0.84[ASN][1000 genomes]
rs7254768	0.91[ASN][1000 genomes]
rs7257481	0.85[EUR][1000 genomes]
rs7258195	0.86[EUR][1000 genomes]
rs7258409	0.86[EUR][1000 genomes]
rs7258477	0.93[ASN][1000 genomes]
rs7258831	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7259653	0.93[ASN][1000 genomes]
rs7260600	0.86[EUR][1000 genomes]
rs7343175	0.85[EUR][1000 genomes]
rs8100289	0.83[EUR][1000 genomes]
rs8101412	0.86[EUR][1000 genomes]
rs8101461	0.85[EUR][1000 genomes]
rs8102966	0.93[ASN][1000 genomes]
rs8103696	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8107638	0.85[EUR][1000 genomes]
rs8107982	0.86[EUR][1000 genomes]
rs8109549	0.85[EUR][1000 genomes]
rs8109577	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8112216	0.86[EUR][1000 genomes]
rs9304980	0.86[EUR][1000 genomes]
rs9941463	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1850387	chr19:21109758-21294264	Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21177400-21182600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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