Variant report
Variant | rs2081057 |
---|---|
Chromosome Location | chr19:21180711-21180712 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10405218 | 0.86[EUR][1000 genomes] |
rs10405406 | 0.83[EUR][1000 genomes] |
rs10406661 | 0.92[EUR][1000 genomes] |
rs10409844 | 0.82[ASN][1000 genomes] |
rs10409877 | 0.92[EUR][1000 genomes] |
rs10411038 | 0.88[EUR][1000 genomes] |
rs10412267 | 0.92[EUR][1000 genomes] |
rs10412688 | 0.92[ASN][1000 genomes] |
rs10413692 | 0.92[ASN][1000 genomes] |
rs10413983 | 0.90[EUR][1000 genomes] |
rs10417165 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10418706 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10421819 | 0.81[ASN][1000 genomes] |
rs10422193 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10423541 | 0.92[EUR][1000 genomes] |
rs10424283 | 0.92[EUR][1000 genomes] |
rs10425969 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs11085424 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11666640 | 0.82[ASN][1000 genomes] |
rs11668795 | 0.84[EUR][1000 genomes] |
rs11671894 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11672142 | 0.82[ASN][1000 genomes] |
rs12104220 | 0.92[EUR][1000 genomes] |
rs12104387 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12608931 | 0.93[ASN][1000 genomes] |
rs12609005 | 0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12609167 | 0.88[ASN][1000 genomes] |
rs12609510 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12609831 | 0.94[ASN][1000 genomes] |
rs12611115 | 0.92[ASN][1000 genomes] |
rs12974016 | 0.92[EUR][1000 genomes] |
rs12975789 | 0.94[ASN][1000 genomes] |
rs12976796 | 0.98[ASN][1000 genomes] |
rs12981855 | 0.81[ASN][1000 genomes] |
rs1971053 | 0.80[AFR][1000 genomes];0.80[EUR][1000 genomes] |
rs1971055 | 0.82[AFR][1000 genomes];0.80[EUR][1000 genomes] |
rs2081050 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2081052 | 0.87[ASN][1000 genomes] |
rs2081054 | 1.00[ASN][1000 genomes] |
rs2081055 | 0.93[ASN][1000 genomes] |
rs2081056 | 0.93[ASN][1000 genomes] |
rs2082003 | 0.90[EUR][1000 genomes] |
rs2098681 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2099648 | 0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2112803 | 0.93[ASN][1000 genomes] |
rs2115493 | 0.92[EUR][1000 genomes] |
rs2164988 | 0.83[ASN][1000 genomes] |
rs2164989 | 0.82[ASN][1000 genomes] |
rs2358792 | 0.95[ASN][1000 genomes] |
rs2358795 | 0.94[ASN][1000 genomes] |
rs2358803 | 0.81[EUR][1000 genomes] |
rs2884548 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35137761 | 0.92[EUR][1000 genomes] |
rs4255903 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4292035 | 0.97[ASN][1000 genomes] |
rs4365405 | 0.92[ASN][1000 genomes] |
rs4488591 | 0.92[EUR][1000 genomes] |
rs4808273 | 0.89[ASN][1000 genomes] |
rs4808275 | 0.92[EUR][1000 genomes] |
rs4809122 | 0.92[EUR][1000 genomes] |
rs62122564 | 0.93[ASN][1000 genomes] |
rs62122565 | 0.93[ASN][1000 genomes] |
rs6511175 | 0.90[ASN][1000 genomes] |
rs6511179 | 0.91[ASN][1000 genomes] |
rs6511181 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6511183 | 0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6511184 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6511190 | 0.81[EUR][1000 genomes] |
rs6511192 | 0.92[EUR][1000 genomes] |
rs6511194 | 0.92[EUR][1000 genomes] |
rs6511196 | 0.92[EUR][1000 genomes] |
rs7246723 | 0.92[EUR][1000 genomes] |
rs7247413 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7247553 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7248087 | 0.95[ASN][1000 genomes] |
rs7248410 | 0.92[EUR][1000 genomes] |
rs7249283 | 0.82[ASN][1000 genomes] |
rs7250169 | 0.92[EUR][1000 genomes] |
rs7252277 | 0.94[ASN][1000 genomes] |
rs7253530 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7253950 | 0.90[EUR][1000 genomes] |
rs7254047 | 0.92[EUR][1000 genomes] |
rs7254053 | 0.86[EUR][1000 genomes] |
rs7254722 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7254768 | 0.98[ASN][1000 genomes] |
rs7254982 | 0.88[EUR][1000 genomes] |
rs7258477 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7258831 | 0.85[ASN][1000 genomes] |
rs7259653 | 1.00[ASN][1000 genomes] |
rs7260268 | 0.92[EUR][1000 genomes] |
rs741674 | 0.92[EUR][1000 genomes] |
rs741676 | 0.92[EUR][1000 genomes] |
rs8100599 | 0.92[EUR][1000 genomes] |
rs8101222 | 0.92[EUR][1000 genomes] |
rs8102966 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8103696 | 0.94[ASN][1000 genomes] |
rs8103825 | 0.92[EUR][1000 genomes] |
rs8106923 | 0.92[EUR][1000 genomes] |
rs8107982 | 0.82[ASN][1000 genomes] |
rs8109577 | 0.85[ASN][1000 genomes] |
rs8111827 | 0.92[EUR][1000 genomes] |
rs8112054 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs8112216 | 0.82[ASN][1000 genomes] |
rs8112500 | 0.92[EUR][1000 genomes] |
rs8182465 | 0.92[EUR][1000 genomes] |
rs9304980 | 0.82[ASN][1000 genomes] |
rs9304982 | 0.92[EUR][1000 genomes] |
rs9941463 | 0.94[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062776 | chr19:20818886-21273361 | Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
2 | nsv932110 | chr19:20818886-21278952 | Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
3 | esv2763043 | chr19:20818886-21290543 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
4 | esv3385528 | chr19:21030777-21495566 | Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
5 | nsv817536 | chr19:21041855-21348237 | Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
6 | esv1850387 | chr19:21109758-21294264 | Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:21177400-21182600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr19:21180400-21182200 | Weak transcription | Stomach Smooth Muscle | stomach |
3 | chr19:21180600-21182400 | Enhancers | Dnd41 | blood |